Brassica napus (rape): 106409219
Help
Entry
106409219 CDS
T04128
Name
(RefSeq) probable pectate lyase 6 isoform X1
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106409219
Enzymes [BR:
bna01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
106409219
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pec_lyase_N
Pectate_lyase_4
Beta_helix
SANT_DAMP1_like
Motif
Other DBs
NCBI-GeneID:
106409219
NCBI-ProteinID:
XP_013705335
UniProt:
A0A816MJE7
LinkDB
All DBs
Position
C7:36961005..36963429
Genome browser
AA seq
459 aa
AA seq
DB search
MASAHLNIGSYVFAFASLFVAIVAPSVQGHVAVYDEYWTQRQTDALRQTIKSYDPNPFNV
TDHFNYHAALAMETTGADNGTRRELRQVRRGRRTKRRGGRHHSLNAIDKCWRGDKNWHKN
RKKLADCVLGFGRRTTGGKKGQFYVVTDASDHDLVNPKPGTLRHAVTRDRPLWIIFGRSM
IIKLQQELIITHDKTIDGRGENVHIMGGAGLTLQFVKNVIIHNIHIKHIKCGAGGMIRDC
EHHVGQRSKSDGDGINIFGATNIWIDHVSMTHCSDGMIDAIMGSTAITISNSHLTDHNEV
LLFGGKDGDVIDKKMQITVAFNHFGKRLVQRMPRVRYGLVHVVNNDYTHWEMYAIGGNKN
PTIISQGNRFIAPHKETCKQVTKREYTPYTEWKSWNWQSERDYFLNGAYFVNSGRANAWS
PAPKNPIHRKFAIRPQSGTGVRRLTKDAGTLGCRPGKSC
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctgctcatttgaatattgggagctatgtcttcgcctttgcctcgttatttgta
gccatcgtggctccatcggttcaaggtcacgtcgcggtatacgatgaatactggacccag
cgccaaaccgacgcattgcgacaaactataaaatcttatgaccctaatccatttaacgtc
acggaccactttaactaccatgccgcattagcaatggagacgactggtgcagacaacgga
acaaggagagagcttcgacaagttagacgcggtcggagaacaaagagacgtggcggaagg
caccactcccttaacgctatcgataaatgctggcgaggagacaaaaactggcacaagaac
cggaaaaagctagcggactgcgtcctaggatttggtcggagaacaaccggaggcaaaaag
ggacagttctacgtagtcaccgacgcatccgaccacgatctcgtcaatcccaagccagga
actctacgacacgcagtgactcgcgacagaccgctatggatcatattcggtagatccatg
atcataaaactgcagcaagaactgatcataacacacgataaaactattgacggtcgagga
gagaatgtacatataatgggaggtgcaggtttaacgttacagttcgtgaagaatgtgatc
atacacaatattcatatcaaacacattaaatgtggggctggtgggatgatcagagactgt
gaacatcatgttgggcagcgttcaaagagtgatggtgatggtatcaatattttcggagcc
acgaatatttggatcgatcatgtctccatgactcattgttctgatgggatgatcgatgcc
attatgggatcgaccgccattactatctccaactcccatttaaccgaccataacgaggtg
ctgttgtttgggggtaaagacggggatgtgatcgacaagaaaatgcagataacggttgcg
tttaaccattttgggaagagattggtccaaagaatgccaagggtcagatacggtttggtc
catgtagtgaacaatgactacactcactgggaaatgtatgctattggtgggaacaagaac
cctaccattataagtcaaggcaaccgtttcatcgctcctcataaagaaacttgcaagcag
gttacaaagagagagtatacaccttatacagagtggaagtcatggaactggcaatcagag
agagattacttcttgaacggagcttactttgtaaattcaggaagggcaaacgcgtggagc
cctgccccgaaaaacccaatccacagaaagtttgcgatccggcctcaatcaggaacaggt
gtaagaagactcactaaggatgctggtacgcttggttgcagaccaggcaagtcctgctga
DBGET
integrated database retrieval system
