Brassica napus (rape): 106409963
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Entry
106409963 CDS
T04128
Name
(RefSeq) polygalacturonase ADPG1-like precursor
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Module
bna_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106409963
Enzymes [BR:
bna01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
106409963
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
End_N_terminal
PTAC
Motif
Other DBs
NCBI-GeneID:
106409963
NCBI-ProteinID:
NP_001303181
UniProt:
Q42399
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All DBs
Position
C6:complement(27169588..27172183)
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AA seq
433 aa
AA seq
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MARCFGSLAVFLCVLLMLACCQALSSNVDDGYGHEDGSFESDSLIKLNNDDDVLTLKSSD
RPTTESSTVSVSNFGAKGDGKTDDTQAFKKAWKKACSTNGVTTFLIPKGKTYLLKSIRFR
GPCKSLRSFQILGTLSASTKRSDYSNDKNHWLILEDVNNLSIDGGSAGIVDGNGNIWWQN
SCKIDKSKPCTKAPTALTLYNLKNLNVKNLRVRNAQQIQISIEKCNNVGVKNVKITAPGD
SPNTDGIHIVATKNIRISNSDIGTGDDCISIEDGSQNVQINDLTCGPGHGISIGSLGDDN
SKAYVSGIDVDGATLSETDNGVRIKTYQGGSGTAKNIKFQNIRMDNVKNPIIIDQNYCDK
DKCEQQESAVQVNNVVYQNIKGTSATDVAIMFNCSVKYPCQGIVLENVNIKGGKASCENV
NVKDKGTVSPKCP
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atggcccgttgttttggaagtctagctgttttcttatgcgttcttttgatgctcgcttgc
tgccaagctttgagtagcaacgtagatgatggatatggtcatgaagatggaagcttcgaa
tccgatagtttaatcaagctcaacaacgacgacgacgttcttaccttgaaaagctctgat
agacccactaccgaatcatcaactgttagtgtttcgaacttcggagccaaaggagatgga
aaaaccgatgatactcaggctttcaagaaagcatggaagaaggcatgttcaacaaatgga
gttactactttcttaattcctaaaggaaagacttatctccttaagtctattagattcaga
ggcccatgcaaatctttacgtagcttccagatcctaggcactttatcagcttctacaaaa
cgatcggattacagtaatgacaagaaccactggcttattttggaagacgttaataatcta
tcaatcgatggcggctcggcggggattgttgatggcaacggaaatatctggtggcaaaac
tcatgcaaaatcgacaaatctaagccatgcacaaaagcgccaacggctcttactctctac
aacctaaagaatttgaatgtgaagaatctgagagtgagaaatgcacagcagattcagatt
tcgattgagaaatgcaacaatgttggcgttaagaatgttaagatcactgctcctggcgat
agtcccaacacggatggtattcatatcgttgctactaaaaacattcgaatctccaattca
gacattgggacaggtgatgattgtatatccattgaggatggatcgcaaaatgttcaaatc
aatgatttaacttgcggccccggtcatgggatcagcattggaagcttgggggatgacaat
tccaaagcttatgtatcgggaattgatgtggatggtgctacgctctctgagactgacaat
ggagtaagaatcaagacttaccagggagggtcaggaactgctaagaacattaaattccaa
aacattcgtatggataatgtcaagaatccgatcataatcgaccagaactactgcgacaag
gacaaatgcgaacagcaagaatctgcggttcaagtgaacaatgtcgtgtatcagaacata
aaaggtacgagcgcaacagatgtggcgataatgtttaattgcagtgtgaaatatccatgc
caaggtattgtgcttgagaatgtgaacatcaaaggaggaaaagcttcttgcgaaaatgtc
aatgttaaggataaaggcactgtttctcctaaatgcccttaa
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