Brassica napus (rape): 106410328
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Entry
106410328 CDS
T04128
Name
(RefSeq) probable pectate lyase 8
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106410328
Enzymes [BR:
bna01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
106410328
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
106410328
NCBI-ProteinID:
XP_013706277
UniProt:
A0A816LR85
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Position
C5:53620431..53624622
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AA seq
416 aa
AA seq
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MAVTKLILFASALLVTTLFVGVNSSRSNETWHEHAVEKPEEVAAMVDMSIRNSTERRRLG
YFSCATGNPIDDCWRCDRKWQLRRKRLADCSIGFGRNAIGGRDGRYYVVTDPGDDDPVTP
RPGTLRHAVIQNEPLWIVFKRDMVITLKQELIMNSFKTIDGRGVNVHIANGACLTIQYVT
NIIVHGIHIHDCKPTGNAMVRSSPSHYGWRSIADGDAISIFGSSHIWIDHNSLSNCADGL
VDAVMSSTAITVSNNFFTHHNEVMLLGHSDSYTRDKVMQVTIAYNHFGEGLIQRMPRCRH
GYFHVVNNDYTHWEMYAIGGSAGPTINSQGNRFLAPTNPFAKEVTKREYTGQSKWKHWNW
RSEGDLFLNGAFFTRSGAGAGAGYARASSLSAKSSSLVGTMTSYSGALNCRAGRRC
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atggctgtcacaaaacttatcctctttgcttctgcattacttgtaacaacgctgtttgtc
ggcgttaattcatccaggtcgaatgaaacatggcatgaacatgcagttgagaaaccagag
gaagtagctgccatggtggacatgagcattcgcaacagcacggagcggagacgcttaggc
tacttctcctgcgccaccggcaacccaatcgacgactgctggcgctgcgaccgcaaatgg
cagctccgccgcaaacgcctcgccgactgctcgatcggattcggccgcaacgcgatcggc
ggccgcgacggccgctactacgtcgtaaccgaccccggcgacgacgatcccgtcaccccc
agaccgggaacgctccgccacgccgtgatccagaacgagccgctctggatcgtcttcaag
cgcgacatggtgatcaccttgaagcaggagctgatcatgaacagcttcaagaccatcgac
ggccgcggcgtcaacgtccacatcgcaaacggcgcgtgcctcacgatccagtacgttacc
aacattattgtgcatgggattcatatccatgactgtaagcccacggggaacgcgatggtg
agaagctctccgtcgcattacgggtggagatcgatagctgacggtgacgcgatctcgatc
tttgggtcgagtcatatctggattgatcataactcgctctcgaattgcgctgatgggctt
gtggatgctgttatgagctccactgcgattacagtctctaacaacttcttcactcaccac
aatgaggttatgttgctggggcatagtgattcatacacaagggacaaagtgatgcaagtt
acaattgcttacaaccattttggtgagggtcttatccagagaatgccaaggtgtaggcat
ggatacttccatgtagtgaacaacgactacacacattgggagatgtatgccattggtggt
agtgctggtccgactattaacagtcaggggaatcgatttcttgccccaacaaacccattt
gctaaggaggtgactaagagggagtacacaggacaatcaaaatggaagcactggaattgg
agatcagaaggagatcttttcttaaacggagcatttttcacacggtctggagctggagct
ggagccggctacgccagagcttcgagtttgtcggccaaatcatcctcactcgtaggcacc
atgacctcttactctggtgctcttaactgcagagccggtcgcaggtgttaa
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