Brassica napus (rape): 106410369
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Entry
106410369 CDS
T04128
Name
(RefSeq) protein CHROMATIN REMODELING 8 isoform X1
KO
K10841
DNA excision repair protein ERCC-6
Organism
bna
Brassica napus (rape)
Pathway
bna03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
106410369
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
bna03036
]
106410369
03400 DNA repair and recombination proteins [BR:
bna03400
]
106410369
Chromosome and associated proteins [BR:
bna03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
106410369
DNA repair and recombination proteins [BR:
bna03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
106410369
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
WHD_Rad26_CSB
ResIII
HDA2-3
WHD_SOWAH
Motif
Other DBs
NCBI-GeneID:
106410369
NCBI-ProteinID:
XP_013706312
UniProt:
A0A816NB48
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All DBs
Position
C7:complement(51092357..51096806)
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AA seq
1160 aa
AA seq
DB search
MEEEEDRFLSSLGVTSANPADIEQTILDEATKKLDNDESVEERLEGTNLLPPSQSELLNK
LRAVKFEIDAVASTVEQAEEEDGLQSGSVLQNALAKDRLRSLGKRKNELEKELSGLHGQG
GTSGGADRGDMQRDLVKGEPSLKRKLKEVRKPSKREGKKVKVVSFHEDTDFDAVFDAASA
GFVETERDELVRKGILTPFHKLEGFERRLQQPGPSNSRNLPEGEDDNEDSSSIDRAVQSM
SLAAKARPTTKLLDAQDLPKLEPTPVPFRRLRKLYKTNDSSDSDAKKSEGGKGKKKRPLP
KRKWTKRISNEDSSLQENEDGRRISATSSCEEEELDDFDEVDDSEKSFVPLEGGLNIPEG
IFIKLFDYQRVGVQWLWELHCQKAGGIIGDEMGLGKTVQVLSFLGSLHFSKMYKPSIVIC
PVTLLRQWRREARTWYPDFHVEILHDSAKDSNGKGRVDASESDYDSEVSVDGDHEQKSKN
TKKWSSLINRVLNSDSGLLITTYEQLRLHGEKLLNIEWGYAVLDEGHRIRNPNAEITLVC
KQLQTVHRIIMTGAPIQNKLTELWSLFDFVFPGKLGVLPVFEAEFSVPITVGGYANASPL
QVSTAYRCAVVLRDLIMPYLLRRMKADVNAHLTKKTEHVLFCSLTVEQRSTYRAFLASSE
VEDIFDGNKNSLYGIDVMRKICNHPDLLEREHSHQNPDYGNPERSGKMKVVAEVLKVWKQ
QGHRVLLFSQTQQMLDILESFLVANEYSYRRMDGLTPVKQRMALIDEFNNSDDVFVFVLT
TKVGGLGTNLTGANRVIIFDPDWNPSNDMQARERAWRIGQKKDVTVYRLITRGTIEEKVY
HRQIYKHFLTNRILKNPQQRRFFKARDMKDLFILNDDGDSNASTETSNIFSQLSEDINIV
GAQTENTSTTDSTTQLDTHDAAEELSGEKDAETNGEPVDEETNILKSLFDAHGIHSAVNH
DAIINANDEEEKMRLEHQASQVAQRAAEALRQSRMLRSRESISVPTWTGRSGCAGAPSSV
RRRFGSTVNSRLTTADKSSTVKNGISAGLSSGKAPSSAELLNKIRGSREQAIGVGLEQTQ
SSSSSSSRVGSLQPEVLIRQICSFVQRKGGSTDTSSIVNHFSDRVLAKDVPLFKSLLKEI
ATLRKDPNGSVWVLKPEYKD
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atggaggaagaagaggataggtttttgagtagcttaggggtgacatctgctaatcctgca
gatatcgagcagacgatactcgatgaggctacaaagaagcttgataacgatgagagtgtg
gaggagcggttggaaggaaccaatctacttccaccaagccagagcgagcttttgaataaa
ctgagggctgtgaagtttgaaatagacgctgttgcatctactgttgagcaagcggaggag
gaggatgggttgcagagtggctctgtgcttcagaatgctcttgctaaagaccgtctcaga
agccttgggaagagaaaaaatgagcttgaaaaggaactctctggtttacatggtcagggc
ggcacttctggtggtgctgatcgcggtgatatgcagcgagatttggtgaagggagagcct
agtcttaagaggaagttgaaagaggttcggaaaccaagcaagagagaagggaagaaggtg
aaagtggtgtcgtttcatgaggatacggattttgatgccgttttcgatgctgcttctgca
ggttttgttgaaacggaaagagatgaattggttagaaaaggaattttaactccttttcac
aagctcgagggttttgaacgccgacttcaacaacctggaccgtcgaactcgcgtaaccta
ccggaaggagaagatgataatgaggactccagcagtattgatagagctgtccaatcaatg
tcgctggctgcaaaagctcgcccaacgaccaagctacttgatgcgcaggacttgccaaag
cttgaaccgacccctgttccttttagaaggctaagaaagctttacaagactaatgattct
tcggatagtgatgcaaagaaaagtgaaggtgggaagggtaaaaagaagcggcctttgcct
aaaaggaaatggacaaagcggatttctaacgaagactctagtcttcaagaaaatgaagat
ggacggagaatctcggccacgtccagttgtgaggaagaagagctagatgattttgatgag
gtagacgacagcgagaaatcttttgtaccgcttgaaggtggattaaacattcctgaaggc
atatttattaaactttttgactaccaaagagttggagtgcagtggctctgggaacttcat
tgccaaaaggctggtggcattattggggacgagatgggtcttggtaagactgtgcaggtc
ttatctttcctcggatccttgcatttcagcaagatgtacaaaccgagtattgtcatatgt
cctgtcacactcttgcgtcagtggagaagagaagcacggacatggtacccggattttcac
gtggaaatactccatgactcggcaaaagattcaaatggcaaaggacgagtcgatgcctct
gaaagcgattatgatagtgaagtttcagtcgacggtgatcatgagcaaaagtctaagaac
accaagaaatggagttctttgataaaccgggttctaaactctgattcggggctactcatc
accacatatgagcaattgaggctgcatggtgagaagctgctcaatattgagtggggttat
gcagtactggacgaaggccaccggatccggaacccaaatgctgaaattactttggtgtgc
aaacagttgcagaccgtccatcgaattattatgactggagcaccaatccagaataaactg
acagaactctggtccctgttcgatttcgttttcccgggaaaactgggagtcctacccgtg
tttgaggctgagttttctgttcccataactgtgggtggctacgccaatgcttctcccttg
caagtgtcaacagcctacagatgtgcggttgttcttcgtgatctgatcatgccatacctc
ctccgccgaatgaaggctgatgtgaacgcacacctcacaaaaaagactgagcatgttctc
ttctgcagcctcaccgtggagcagcgttctacctacagggcgttccttgctagctcagag
gtagaagatatttttgacggcaacaagaactctctgtatgggatcgatgtgatgcgtaag
atatgcaaccaccctgatctgctcgagagagaacactctcaccagaacccagattatggg
aatccagaacgcagcgggaagatgaaggttgttgcagaagttctaaaggtctggaaacag
caaggacaccgtgtacttctgttttcacagactcagcaaatgcttgacatcctcgaaagc
ttcttggttgcaaacgagtatagctaccggaggatggatggtcttacgccggtgaaacag
aggatggcgttgattgatgagtttaataactcagatgatgtgtttgttttcgttctgaca
acgaaggtgggtggtttgggaacaaacttgaccggggcgaatagagtcataatctttgac
ccggattggaacccctcaaacgatatgcaggcaagggaacgtgcttggcgtatagggcaa
aagaaggatgttactgtttacagattgatcacacgagggacaattgaggagaaagtatat
catagacagatatataaacattttctcaccaataggatcctcaagaatccacagcagaga
agattcttcaaagctagggatatgaaagatcttttcatcctgaatgatgatggtgatagc
aacgcatccaccgagacctctaacatcttcagtcagctgtctgaagatataaacatcgta
ggagctcaaacagagaatacaagtacaaccgattccactacacaacttgatactcacgat
gcagcagaagaactctcaggagaaaaagatgcggaaaccaatggcgagccagtggatgaa
gagacaaatatcttaaagagtctcttcgacgcacatggaatacatagtgctgtgaatcac
gacgccatcattaacgccaacgatgaggaagagaagatgagacttgaacaccaggcatct
caagtggcgcagagagctgcggaagcattgcgccaatcgcggatgctgcgtagccgcgaa
agcatctcagtgcccacatggacgggaagatctggctgtgcaggtgcaccttcatctgta
cggaggagattcggatcaactgtgaactcccggttaaccacagcagacaaatcatcaact
gtcaagaacggtatcagcgcgggtctatcttcaggcaaagcaccctcttccgcagagctt
ctcaacaaaatccgcggaagcagagaacaagccattggcgttggccttgagcagacacag
tcttcttcgagttcaagcagcagagtaggttcgttgcagccagaggtcttgatccgacag
atatgcagctttgtacagcgaaaaggcggaagcacggacacgagcagcattgtcaaccat
ttctcggacagagttcttgctaaggacgtaccgttgtttaagagtctcttgaaggagatt
gccacgcttcggaaggatccaaacggttcggtgtgggtcctcaaaccagagtacaaagac
tag
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