Brassica napus (rape): 106410439
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Entry
106410439 CDS
T04128
Name
(RefSeq) probable pectate lyase 22
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106410439
Enzymes [BR:
bna01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
106410439
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
106410439
NCBI-ProteinID:
XP_013706385
UniProt:
A0A078IDI5
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Position
C9:complement(5385958..5389024)
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AA seq
438 aa
AA seq
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MFLCLSPFTHMFHPKTLKLYLQQEAKNTMLVSSHASFTLVFLYCIFFSAVALSLPVSDPE
LVVEEVHRKINESISRRNLGYFSCETGNPIDDCWRCDKDWEKNRKQLADCGIGFGKNAIG
GRDGEIYVVTDPGNDDPVNPKPGTLRYAVIQDQPLWIIFNRDMTIQLKEELIMNSFKTLD
GRGASVHISGGPCITIQYVTNIIIHGLHIHDCKQGGNTYVRDSPEHYGWRTISDGDGVSI
FGGSHVWVDHCSLSNCNDGLIDAIRGSTAITISNNYLTHHNKVMLLGHSDTYVQDKNMQV
TIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPNGPF
DKEVTKHEDAPESEWSHWNWRSEGDLMLNGAFFTLSGAGPGKSSSYSKASSLAARPSSHV
GEITIASGALSCKKGSHC
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgtttctttgtctttctcccttcactcatatgtttcatcctaaaaccttaaaactttat
ctacagcaagaagccaagaacacaatgctagtttcatcacatgcatcctttacacttgtc
tttctctactgcattttcttctccgcagtggctttgtctttgcccgtttctgaccccgag
ctcgtcgttgaggaagtacacaggaaaataaacgagtctatatcaagaaggaacttagga
tacttctcgtgtgagaccggtaatccaatcgatgattgttggcgatgcgacaaagattgg
gagaaaaaccggaaacagttagctgattgtggaatcggttttggcaaaaacgcaatcggt
ggtcgtgatggcgaaatctacgtggtcaccgatccaggaaacgatgatccggtaaaccct
aaacccggaacactaagatacgcagtaatccaagaccaaccgctttggatcatatttaac
cgtgacatgacgatccaactaaaagaagaactcataatgaactctttcaaaaccctagac
ggtcgaggagcatccgtacacatctctggtggaccgtgtataaccatacaatatgtgacc
aacattataatccacggtttgcatatacatgattgtaaacaaggtgggaacacttacgta
cgagactctccagagcattacgggtggcgaacgatatcggacggtgacggtgtgtcgatc
ttcggtgggagtcacgtgtgggttgatcattgctcgctctcgaattgtaacgatgggttg
attgatgcgatacgtggatcaacggctataacgatctctaataactacttgacgcatcac
aacaaggttatgttattaggacatagcgacacgtatgtgcaagacaagaacatgcaagtc
actatcgcttttaaccattttggagaaggcctcgtccaaagaatgccaaggtgtcgacat
ggatatttccatgtggtgaacaatgactatacacattgggaaatgtatgcaattggagga
agtgctaatcctaccatcaactctcaaggcaaccgttttcttgctcctaatggccctttt
gacaaagaggtaaccaagcatgaggatgcgccagaaagcgagtggagtcactggaactgg
agatcagaaggagatctaatgcttaacggtgcattctttacactttctggagctggacca
ggtaaatcgtcaagctattcgaaagcctcaagcctagctgctagaccgtcctctcacgtt
ggtgagataactatagcatcgggtgcactcagctgcaaaaaaggttctcactgctga
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