Brassica napus (rape): 106410570
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Entry
106410570 CDS
T04128
Name
(RefSeq) U3 small nucleolar RNA-associated protein 20
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
bna
Brassica napus (rape)
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
bna03009
]
106410570
Ribosome biogenesis [BR:
bna03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
106410570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
OAM_alpha
HU-CCDC81_euk_1
Motif
Other DBs
NCBI-GeneID:
106410570
NCBI-ProteinID:
XP_013706551
LinkDB
All DBs
Position
C7:52248749..52262237
Genome browser
AA seq
2643 aa
AA seq
DB search
MATPADARAVKSLNTSGGRKKFVFKNLAQKVNEIDISGFFKSLEKVKPEPSEGSSFFRDC
LVELRELNTAEDFISFYEEMLPFVQTLPLVIEQKEIIFTKLVSRLQMDARLSLDAILRLI
AALSRDLLEDFIPFLPRIVNSLVALLENGAKKDADIIKQIFSSWCEILMNLQKYLVRDIE
GILRDTLDLRYHPKDYINELMSESMSFLLRNARNEQLEKGINRILSEVADPAKQDGAVDL
LYYAMRGTSGSLHSKAGRVLSFLLKDSTLSFCDNSPQGAGTVVGVVSSTLERLCEDLEAD
KLNVMWKCLIQEINESIKNKNSVHLSRLLSVLTAAVRVQKGLKVHDYPSLIRLVGLIVST
FVASSETVVEGDNLSAVIDEVLQLMLCTINRVTDLETVASQWAPIFAVKRSSLLTFLEEL
LNKDQSVVKAFTNNILSAINNMIWESSEEVIPLLLTFCENQLTSHDRVTIVDQTFEKIHE
FLEENIKKVRQNIENTGLSQTDDAELASIWGVVNCYPYFKVDSSLLISFKDTLRQHLTVP
DANSSSAPELMWQSLLGAALSSCHKLPRRINHNDIEEALSMAKDYKSCVQVLTPVADFLD
SMHRLALGNDDRSKPQPELQEEKAKDAFGIFSENLRHPNKCIRLMTLRILCHFETFSSDS
SSEEHPPKKKMKTEETKKPLHERNVLELLRSIEEIVPTVNTEGELITMIHEIKRNLSAGL
VHAAYLQLVLNGLMGIFHISYTKLWGPASECLEVLLRNHTVTVWSDFVCYLDQCQLKSEK
LDNHSENPNHNLSERPTDLIGRFNLFLCPPSNSTTTATVATQLLQTLQKVPKVAQSHASE
ILPRLLKFLGYNIENPTSVGLFNAQVCKGDDWRNVLKQWLTLLKLMKNPKSFQFSEFLNN
VLQNRFLDDNDAELQTIVLECLLLWNDFLLPHREHLLKLIKPEELREELTTSNMSVDIEE
AHKSLLFSLEIRILAPKVRTLKNLASRKHTSINHRKAVLRFIAERDVDDLALFFVLLIKP
LNIISEETMDLFWSSGKASLDYFQKADFLKDFTGDTISTLSKNQKSGFLHVIQDILEVFD
ELRVRPFIDFLMGCVVRLMVNYEERNIASLTPRNDTAASSTPDNKENVSVHQDQAGTALK
QFKELRSLCLKIIAHVLDKYEDSDLGSEFWDLFFSAVNPLIKNFKQEGSSSEKTSSLFSC
FLSMSRNRNLVTLLCREESLIPDICSILTVNTASDAIKSSALKFIENLLCLDSELHEDDS
MIKGFLDPYIETLFSSLHSLFIGDINKRKSIKYHGEREIRILKLLSKHMGDQSCAMKYLE
VLLSFLDKNVKDSDIRREALLAIQDITSLLGTESVTKIINKVSPLLVDAEVDVRLCICDL
LESLAKIDFSLDDVAKRIRDMNSISVMEVDDLDYERIVNAYVEIDSDFFAKSSKQHTMII
LSQSLYNLSSESIMLRGSAHKLLSSFIEFSASILCQEASAHSGAGKEVKIADASWTGKHT
LSIVDFILKHIADAVSKGGNIVKEWILLIREMVTKLPDAGDLGAFRPLCSEDENIDFFKS
IIHIQSHRRAKAISRFAKVVGDSSLPEGVLRKLFVAVFFHMLLDGQDVKEKENNVRNACT
EALASVSAHMSWKSYYALLNRCFREMHNHTKKGKLLLRLICLILDKFHFTEDGGYRQEEI
EGIHKSLQTVFGKMQKLMDSESDNVNVNSSVAALKVLKLLPKDVMDDYLSPIIKRIATFT
KNRLESTRGEARSALVACLKELGLEYLQVVIKSLRDILKRGSELHVLGYTVHSILSKCLS
KPTCGKLDHCLDDLLAVVETDIFGVVAEQKDVDKFKSKMKETGKSMSFETLKLISENVTF
REHALKLLSPVTAQLRWHLTPKIKPDLVKMLQHIAVGIEGNPSVDQVDLFVFIYGCVDDG
INNRNGLGDQGSSPPSKKKRKSRDETVGLISGAMSCPHLITVFALDLLQNRLKKIKLHNT
DKELLGKLDSFIRLLTECLRSKYEEIVSSALRCFTSLIWFPLPSLMSGAEELKTSLLTIA
QSAVDSSSSLVRSCLKLLTTLLGNKNITLSQEQLKLVIRFPMFADLESDPSFVAFSLLKA
IVKRKLVVPEIYDVALQVSELLVKSQLDSIQKKCKEILLQFLVHYPLSEKRLQQHVEFLL
QNLRYEHPTGREAVLDMLYALILKFSDRGKESVLDSQWRTMLIKLAPCLGTDTNKQVLSR
IGSVITLLINCISEDQVGSVISVCLCWYKQQRVQAVAAQVLGFIIDAKRNQFQKHIHNTL
EDAKVIMESALSASSLHNVEEGVIPFWKEAYHSLIMIEKMVGQFPYLKLKKDLEDVWKMV
FKFLLHPHAWLRSKSCRLLNYYFKALARRKRAESQIVVSDSLLENPSSLFSVAVSLCSQL
KELPTTGDDIEDLLIENIVFAVSSLHSLIGHSVQATDDGFWSSLGEDEQVVFLKAFEVLD
SGKGRSTFLSLTSGKRTDNGEEEDAASGVRNVLIGSLLKRLGKVALDTESVQMKIVFNVY
KAFTSQMNQVECRLYAYKILLPLYKVCEGFTGKIISDESKQLAEEVRDSIRDNTLGNQLF
VEVYSEIRKSLRNKREKRKREEKTMAVVNPERNAKRKLRLASKNKANKRRRMTSMKLSRW
ARS
NT seq
7932 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccccagctgatgctcgggccgtgaagtcgctcaacacttccgggggacgtaag
aaattcgtgttcaagaatctcgctcagaaagtcaatgagattgacatcagcggtttcttc
aagagcctggagaaggttaagcctgagccttcagagggctcctcgtttttcagagactgc
ctcgtcgaattgagggaactgaatacagcagaagatttcatctcgttttacgaggaaatg
ttgccatttgttcagactttgcctttggttattgagcaaaaagaaataatcttcaccaag
ctcgtctcgagattacaaatggatgcaagattgtccctggacgccattctcaggttgatt
gctgctttatcaagagatctcttggaggactttatccccttccttccacggatagtgaac
tccttagtggcactcctagaaaatggtgccaagaaagacgcggatattatcaagcagata
ttctcttcatggtgcgagatattaatgaatctgcagaagtatctagtacgcgacatcgaa
ggtattctcagggatacgttggacttgaggtatcatcccaaagactacatcaatgaatta
atgtcagagtctatgtcatttttgttgaggaatgcgcggaatgagcaacttgaaaaaggg
atcaacaggatcctttccgaagttgcagatccagccaaacaagatggagcagttgattta
ctttattatgctatgagaggaacctctggaagtctccattcaaaagccgggagagttctc
agtttcttgctgaaagattcaacattatctttttgtgataattctcctcaaggcgctggt
acagtcgtgggagttgttagttccactttggagagattatgcgaggatttggaagcagac
aaattaaatgtgatgtggaagtgcttgattcaagaaataaacgaatcgatcaaaaacaaa
aactctgttcatttaagccgactgttgagtgtgcttactgcagctgtcagggttcagaaa
ggtctcaaggttcatgattacccatctttgattcgacttgtgggcctcattgtgtcaact
tttgtggcttcctctgagaccgttgtagaaggggataacctatctgctgtcattgatgaa
gttctgcaactgatgttatgcacaataaacagagtcactgatttggaaactgttgcttcg
caatgggctcccatttttgccgtgaagcgttcaagtttgctgacttttctggaggagttg
ttgaacaaggatcaatcggtagtgaaagcctttacaaacaatatattaagtgcaatcaac
aatatgatttgggagtcttctgaggaagttattcctctgttactaacattttgcgagaac
caactaacaagtcacgacagagtgaccatcgtagatcaaacatttgagaaaattcatgag
tttctggaagaaaatatcaagaaggttcgacagaacatagagaacactggattatctcaa
actgatgatgccgagttggcttccatttggggagttgtcaactgttacccttatttcaaa
gtggattcgtcattactgatttcctttaaggatactctcagacagcatttgacagtgccg
gatgcaaactcgtctagtgccccagaattgatgtggcagagcttacttggtgctgctttg
agttcatgtcacaaactgccgagaagaatcaaccacaacgatatagaggaagcattgtct
atggctaaagattacaagtcatgcgtacaagtgttgacccccgtggccgattttttggac
tcaatgcacaggcttgcgttaggtaatgatgacaggtctaagccacaaccagaacttcaa
gaagaaaaggctaaagatgcttttggcatattttcggaaaatttgcgccacccaaacaaa
tgcatccgtcttatgacgctgaggattttgtgccattttgaaacattttcgtccgactct
tcttctgaagagcatcctcccaagaagaaaatgaaaactgaggagaccaaaaaacccctt
catgaaaggaatgttcttgagttattacgctcaatcgaagagattgttcccacagtgaat
acggagggggagttgatcactatgattcatgaaataaaaaggaatctctctgctggcttg
gtacatgcggcatatttgcagctagtattgaatgggctgatgggaatatttcatattagt
tatactaagctgtggggtccagcatctgagtgtcttgaggttcttctgaggaatcacaca
gtaactgtatggagtgattttgtttgctatttggaccagtgccagctaaaatctgagaaa
ctcgacaatcatagtgagaatccgaaccacaacttgtcagagaggcctactgatctgatt
ggccgttttaatttatttctctgtccgccgtctaatagcacaactactgcaacggtggct
acgcagttgctccagaccttgcagaaagttcccaaagttgctcagtcccacgcttctgag
attctccctcggttgctgaagtttctgggatacaacattgaaaatcctacgagtgtcgga
ttattcaatgcgcaagtttgtaaaggagatgattggaggaatgttcttaaacagtggttg
actttgctgaaattgatgaaaaaccctaagtcgtttcagttcagcgaatttctaaacaac
gttctgcagaatagattcctggacgataatgatgctgaactacaaaccattgttctagag
tgccttctgttgtggaacgacttcttactcccacaccgcgagcatttgttgaaactgatc
aaaccagaggaattaagagaagaactcacaacctcgaacatgtccgtagacattgaagaa
gctcacaaatctcttcttttctctcttgaaattcgcatccttgcgccaaaagtcaggaca
ttaaagaatttggcttcacggaagcatacaagtataaatcaccggaaggcagttcttcgc
tttatagctgagcgggatgttgatgaccttgccctcttttttgtattgttgataaagcct
ttgaacatcatatcagaggaaacaatggacttgttctggagttcaggcaaagcttcgctg
gattatttccaaaaggcggatttcttgaaggatttcactggtgatactatttctacatta
tccaagaatcagaaatctgggtttcttcatgtcatccaagacatccttgaagtctttgat
gagctccgtgtccgaccttttatagactttttgatgggatgtgttgtccggctaatggta
aactatgaagaaagaaacattgcatcattgacaccaagaaatgacactgccgcctcatca
accccagacaataaagagaatgtttcagttcatcaagaccaggctggcactgctttgaag
cagtttaaagagttgagatcattatgtctgaaaattattgctcatgttcttgataaatac
gaggattctgatcttggttccgagttctgggacctcttcttttcggcagtaaatccgtta
attaaaaatttcaagcaggagggttctagtagtgagaaaacaagttccttgttctcatgc
ttcttgtcaatgagtagaaaccgcaatctcgtgaccctcttatgtcgggaagagtctctt
attccagacatttgttcgattctgacagtcaacacggcttcagacgctataaagtcgtct
gcactcaagttcatagagaatctgctttgtcttgacagtgagttgcatgaggatgacagt
atgatcaaaggcttcttagatccgtacatagaaacactgttcagcagcttgcattctctt
ttcattggggatattaacaaaaggaaatcaatcaagtatcatggggaaagagagattagg
attcttaaattgttgtcaaagcacatgggagatcagtcttgtgctatgaagtatttggaa
gtcttactttctttcttggataaaaacgtgaaagattctgatatccgtcgtgaggctttg
ctagccattcaggacatcacatcgttgcttgggactgagagtgtcaccaaaattataaac
aaagtctctcctctacttgttgacgctgaagttgacgttagattatgcatttgtgatctt
cttgaatctcttgcaaaaatcgacttttctctggatgatgtggcaaagcgcatccgagat
atgaattccatctcagtcatggaagttgatgatcttgactatgaaaggatagttaatgct
tatgtggagattgactcggatttctttgctaaatcctcgaagcagcacacgatgattata
ctgtcacaaagtttatacaacttatcatcggaatccattatgttaaggggaagcgcacat
aagctcttgtcatctttcattgaattttcggcctcaatactatgccaagaagcttcagct
cactctggcgctggcaaagaggtcaaaatagctgatgcaagctggacaggaaagcataca
ctgtccattgtggattttatcttgaaacacattgctgatgcagtaagcaaaggaggcaat
atagtaaaggagtggattcttttgatacgtgaaatggtgacaaaactcccagatgccgga
gatcttggtgcatttagacctttatgctctgaagatgagaatattgatttttttaaatct
attattcacattcagtcacaccgtagagcaaaggcgatttcacgtttcgcaaaagtggtc
ggagatagcagcctgcctgagggagtcttgagaaaactgtttgtcgctgtctttttccac
atgttgctcgatggacaagatgtaaaagaaaaagagaacaatgtccgtaatgcatgcaca
gaggcccttgcatctgtatcggcacatatgagttggaagtcgtactatgctctattgaat
cggtgtttccgtgagatgcacaatcataccaaaaagggaaagcttctgctgcggcttatc
tgcttgattttggataaatttcattttacagaagatggtggttacaggcaagaggagatt
gaggggattcataaaagccttcaaactgtgtttggaaagatgcagaagctgatggattct
gagtctgacaatgttaatgttaacagcagtgtggctgcgctgaaggttctaaagctgctt
cccaaagacgtaatggacgattatctgtcccctataattaagaggattgccacttttacg
aagaaccggttggagagcacacgtggtgaagccagatctgctctggttgcttgtttgaag
gaattggggctcgagtacttgcaggttgtcatcaaaagtttacgtgatatcctgaaacga
ggatctgagttgcacgtgctgggatacaccgtccattctatcttatcgaagtgcttgtcc
aaacctacgtgtgggaagttggatcattgtttggatgatctccttgctgtggttgaaacc
gatatctttggagtggttgctgaacagaaagatgtggataaattcaaatccaaaatgaaa
gagacaggaaaaagcatgtcattcgagactctgaagttgatttctgaaaatgtaacgttc
agagaacatgcattgaaattactgtctccggtcactgctcagctgcggtggcatctaact
ccaaagataaaaccagatctggtgaagatgttacaacacattgcagttggtattgaaggc
aatccatctgttgaccaagtagatctttttgtttttatatatggttgtgttgatgatggc
attaacaacagaaatggtcttggagatcaagggtcttctcccccatccaaaaagaaaagg
aaatcaagagatgagactgttgggttgatttctggtgctatgtcttgtccacatcttata
acagtgtttgctctggacttactgcaaaacagactgaagaaaattaaactccacaacact
gataaagagctgctggggaagttagattcgtttattagactacttactgaatgcttgcgt
tctaagtatgaagagattgtctcatcagcccttagatgtttcacttcgttaatatggttt
ccactgccttccctcatgtctggagcagaagagttgaaaacatcattgttgacaattgct
cagtctgcagtggattccagcagttctcttgtgcggtcatgccttaagcttttaacaacg
ctcctcggtaataaaaacataactttgtcacaggagcagttaaagttggtgattcggttc
cccatgtttgctgatctggagtccgatccatcctttgttgccttttcactcctcaaggcc
attgtgaaacgaaaacttgtggttccagagatttatgacgttgcacttcaggtttcagag
ttgttggtaaaaagtcagctggactcaatccaaaagaaatgcaaagagatactgttacag
tttttggtccactacccactttctgagaaacgtttacagcaacacgtggaatttctgctg
caaaatctgaggtatgaacatccaacaggaagagaagcagtccttgacatgctttatgct
cttatcttgaaattctcagatcgcggcaaggagtcagttcttgacagccagtggagaaca
atgcttattaagcttgctccgtgtttgggcaccgatactaataaacaagtgctttcccgg
atcggttctgtgataacacttctgataaattgcatcagtgaagatcaagttggttccgtt
atctcggtttgtctgtgttggtataagcagcagagggtacaggctgtcgcagcacaggtg
ttgggatttataattgacgctaagaggaatcaatttcaaaagcatatccacaatacattg
gaggatgccaaagtgataatggagtctgctctcagtgcttccagcctgcataatgttgag
gaaggcgttattccgttctggaaggaagcataccactccctgattatgatagagaagatg
gtcgggcaatttccttatttaaaactcaaaaaagatttagaggatgtttggaaaatggta
tttaagttcttgttgcacccacacgcatggttaagaagtaaatcctgccggctactgaat
tattatttcaaggcattggctaggaggaaaagagcagaatctcagatagtagtatctgat
tctcttcttgagaacccaagtagcctgttctcggttgctgtttctctttgctcccagtta
aaggagctacccaccacaggggatgacattgaagatctcctcatagaaaatattgttttt
gcggtctcgagtcttcattccctgattggacattctgttcaagcaacagacgatgggttc
tggtccagtcttggcgaggatgagcaagtggtgttcctaaaagcctttgaagtgcttgat
tcgggtaagggaaggtctacgtttctgtctcttacctcaggcaaacgtactgataacggc
gaggaggaggatgctgcgagtggtgtaaggaatgtattgattggaagcttgctcaagagg
ctcgggaaggttgctcttgatacggagtctgttcagatgaagattgtgttcaacgtctac
aaagcattcacctcacagatgaatcaagtagaatgtcgtttatatgcctacaaaattctg
cttccattgtacaaagtctgcgaaggtttcacaggaaagatcatctcagatgagtctaaa
caactagcagaggaggtacgagacagtataagagacaatactttaggcaaccaactgttt
gtggaggtttacagtgagataaggaaaagtctgagaaacaagagggagaagagaaagaga
gaagaaaagacaatggcagtggtgaatccagagagaaatgcaaagaggaaactgaggtta
gcttcaaagaacaaagccaacaagaggaggaggatgacaagcatgaagttatctagatgg
gctcgctcttga
DBGET
integrated database retrieval system
