Brassica napus (rape): 106410620
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Entry
106410620 CDS
T04128
Name
(RefSeq) cleavage stimulation factor subunit 50
KO
K14406
cleavage stimulation factor subunit 1
Organism
bna
Brassica napus (rape)
Pathway
bna03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106410620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106410620
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
106410620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40_Prp19
WD40
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_CDC20-Fz
Beta-prop_WDR36-Utp21_2nd
Beta-prop_EML_2
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
WDR55
Beta-prop_TEP1_2nd
EIF3I
ANAPC4_WD40
WD40_Gbeta
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_1st
WD40_MABP1-WDR62_2nd
NBCH_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
WD40_RFWD3
Beta-prop_EIPR1
Cytochrom_D1
Beta-prop_WDR75_1st
Beta-prop_WDR19_1st
Beta-prop_SCAP
Beta-prop_DCAF4
Beta-prop_NWD2_C
Ge1_WD40
Beta-prop_IFT122_1st
Beta-prop_VPS8
Beta-prop_EDC4L
VPS8_N
Motif
Other DBs
NCBI-GeneID:
106410620
NCBI-ProteinID:
XP_048617972
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Position
C7:44912862..44915608
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AA seq
430 aa
AA seq
DB search
MENSGSLEQALQEGNILRQLNALIVAHLRHHNLSQVASDVASATMTPLNVEVSPTRLLEL
VAKGLAAENNGSLRGVSSSVLLPTSYGSVTNPRTASIDFSATHVKGSSKTLPKHESKQLS
EHKSVVRCARFSSDGMFFATGGADTSIKLFEVPKVKQMLSGDTQARPLIRSFYDHAEPIN
DLDFHARSTILVSSAKDNCIKFFDFSKTTAKRAFKVFQDTHNVRSVSFHPSGEFLLAGTD
HAVPHLYDVNTYQCFLPSTFPDSGVNGAINQVRYSSTGSVYVTASKDGSIRLFDGVSAKC
VRSISSAHGKSEVTSAVFTRDQRFVLSSGKDSTVKLWEIASGRMVKEYLGAKRLKLRSQA
IFNDTEEFVISIDEGNNEVVTWDARTAEKVAKWPSNHNGVPRWVEHSPVESVFVTCGTTD
RSVRFWKESV
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atggagaatagtggcagtttagagcaagctctgcaagagggaaacatcttgaggcagctc
aatgcccttatcgtggctcatctccgtcaccataatctctcacaggttgcaagtgatgtt
gcttcagccaccatgacaccattgaatgttgaggtttctccaacccgtcttctggagctt
gttgcaaagggtcttgcagcggagaacaacgggtcactgagaggtgtttcttcatcagtc
ttgttacccacttcttatggatcagtcactaatcctcgcacagcttctattgacttcagt
gctactcatgtaaagggctcttcaaaaactctcccaaagcatgaatcaaagcagctatca
gagcacaagagcgtcgtcaggtgtgcaagatttagttctgatggaatgttttttgcaacc
ggcggtgcagacacatctattaagctctttgaggtgccaaaagtaaagcagatgctttca
ggagatactcaagctcgaccattaatacgaagtttttatgatcatgctgaaccaataaac
gatcttgatttccacgctcggagcacaatcctagtatccagtgccaaagacaactgtata
aagttcttcgacttctctaaaacaacagctaaacgagcatttaaagtttttcaggataca
cataacgtgcgctctgtgtctttccatccttctggagagtttcttcttgcaggaactgat
catgcggttccacatctgtacgatgtaaacacttatcaatgcttccttccttcaactttc
ccagacagtggagtaaatggagccattaatcaggtgcggtattcttcaactggatccgtc
tacgttacagcctcaaaggatggatctattcgactctttgatggggtaagcgcaaagtgt
gtacgctccattagcagtgcacatggaaaatcagaggtcactagtgctgtattcaccaga
gatcaaaggtttgttctctcgtctggtaaggattctacggttaagctatgggaaatagct
tctggtcgaatggtcaaggagtacctcggagcaaagaggttaaaactgcggtctcaggca
atctttaatgacacggaagagtttgtaatctccatagatgaaggaaacaatgaggtcgtt
acgtgggatgcgagaacagcagagaaagtggcaaagtggccttcaaaccataacggtgta
ccgcggtgggtcgagcactcaccggttgaatcagtctttgttacttgtggaaccacagat
agatcagttcggttctggaaggaatccgtgtag
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