Brassica napus (rape): 106410625
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Entry
106410625 CDS
T04128
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 isoform X1
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
bna
Brassica napus (rape)
Pathway
bna03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106410625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bna03041
]
106410625
Enzymes [BR:
bna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
106410625
Spliceosome [BR:
bna03041
]
Complex C
Other components
Step II factors
106410625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
SLFN-g3_helicase
AAA_24
Flavi_DEAD
nSTAND3
AAA_30
T2SSE
Microtub_bd
ResIII
ABC_tran
AAA_16
ATPase
SRP54
Motif
Other DBs
NCBI-GeneID:
106410625
NCBI-ProteinID:
XP_013706622
LinkDB
All DBs
Position
C2:2461419..2467796
Genome browser
AA seq
1249 aa
AA seq
DB search
MGVDPLKAADTSETEKESGGGGGGDLPVKEKLTFTAPERKSRLGLDVRAMEKRESAKSQG
EFKVPKKPAVSVSASMDEDDRSGVSGIDDGGDNSRPDHSSRRYRDKSSRSETPQESTVTT
EKAAASDTPRTSRYERDDSSRSRNEYRYDRSETPRSRQRSTYDEIDRYRGRESYRESPRD
YHGEKRGRYSVDRRTPDWDDGRWEWEDSPRGDRDSTYNKRHQPSPSPMLGAASPDARLAS
PWLDTPRSTMASASPWDIGAPSPVPIRASGSSVRSSGSRYGGRSNQRADSREGDLTKEGH
PDEDRSEGAEEFNHEITDTMRREMEYHSDLAWYDTDEGNSLFDADSASFFLGDDASVQKK
EAELAKRLVRRDGSKMSLAQSKKYSQLNADNAQWEDRQLLRSGAVRGTEVQTEFDSEEER
KAILLVHDTKPPFLDGRIVFTKQAEPVMPIKDPTSDMAIISRKGSGLVREIREKQSMHKS
RQRFWELAGSNLGNILGVEKTAEQIDADTAEVGDEGEVDFKNEAKFAQHMKKGEAVSEFA
MSKTMAQQRQYLPIFSVRDDLLQVIRENQVIVVVGETGSGKTTQLTQYLHEDGYTVNGIV
GCTQPRRVAAMSVAKRVSEEMETELGDKVGYAIRFEDVTGPNTVIKYMTDGVLLRETLKD
SDLDKYRVVVMDEAHERSLNTDVLFGILKKVVARRRDFKLIVTSATLNAQKFSDFFGSVP
IFNIPGRTFPVNILYSKSPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFSL
KERMEQLIASSKRDVTNLLILPIYSQLPADLQAKIFQKPEDGARKCIVATNIAETSLTVD
GIYYVIDTGYGKMKVFNPRMGMDALQVFPISRAASDQRAGRAGRTGPGTCYRLYTESAYL
NEMLPSPVPEIQRTNLGNVVLLLKSLKIDNLLEFDFMDPPPQENILNSMYQLWVLGALSN
VGGLTDLGWKMVEFPLDPPLAKMLLMGERLDCIDEVLTIVSMLSVPSVFFRPKERAEESD
AAREKFFVPESDHLTLLNVYKQWKEHDYRGDWCNDHYLQVKGLRKAREVRSQLLDILKQL
KIPLKSCGPDWDIVRKAICSAYFHNSARLKGVGEYVNCRTGMPCHLHPSSALYGLGYTPD
YVVYHELILTTKEYMQCATSVEPHWLAELGPMFFSVKDSDTSMLEHKKKQKEEKTAMEEE
MEKLRRDQAEAEVRSKEREKRKRAKQQQQVSGPGMKKGSTYLRPKKFGL
NT seq
3750 nt
NT seq
+upstream
nt +downstream
nt
atgggggtcgacccgctcaaagctgcggacacgtcggaaacggagaaggaaagcggtggc
ggtggcggtggcgatcttccggtgaaggagaaactgacttttacagctcccgagaggaag
tctcgtctaggtttggatgtaagggcaatggagaaaagagagagtgccaagtctcagggg
gagtttaaggtccccaagaagccagcagtatctgtttcagcgtctatggatgaagatgat
agatctggtgtatcgggaattgatgatggaggagataacagtcggcctgaccattccagc
agaaggtatagagataaatcttcaagatctgagactccacaagaaagtactgtgaccaca
gagaaagctgcagcttcagatactcctaggacatctagatatgagagagatgatagcagt
agaagccgaaacgaatataggtatgacagaagtgaaactccgcggtcaaggcagagaagc
acatacgatgagatagaccgctaccgagggagggagtcctatcgcgaatcaccccgagat
tatcacggagaaaagcgcggaagatacagtgttgataggagaactccagactgggatgat
ggaagatgggagtgggaagatagtccacgcggagatagagactctacttacaacaaacgg
catcagccttctccatcacccatgttaggtgcagcttcaccagatgctcgtttagcctcc
ccttggctggatacaccacgctcaacaatggcttctgcttctccatgggatattggtgca
ccttctcctgtcccaatccgggcttctgggtcctctgtcagatcctcaggctcaaggtat
ggtggaagatccaatcaacgtgcagactctagggaaggtgatctgaccaaggaggggcat
ccagatgaggatagatcggaaggagctgaagaatttaaccatgagatcacagacacaatg
cgtcgggaaatggaatatcactcggatcttgcatggtatgatacggacgaagggaactcg
ctgtttgatgcagatagtgcatccttttttcttggagatgacgcttctgtgcagaaaaag
gaggctgagctggcaaaaagactggttaggagggacggtagcaaaatgtcactcgctcag
agtaaaaaatactctcagcttaacgctgataatgcccagtgggaagaccgtcagcttctc
agatctggagctgttagaggcacagaagtgcagaccgagtttgatagcgaggaagaacgg
aaagcaattcttcttgtgcatgatacaaagccgccttttcttgatggaagaatcgttttc
acaaagcaagcagagccagtgatgcctataaaggatcccacatcagacatggctataatt
tcgcgaaaaggatcaggtcttgtgagagaaattcgggagaaacaaagtatgcataaatcg
cgacagcgattttgggagcttgcaggttccaaccttggtaatatccttggtgttgaaaaa
acagctgagcagattgatgccgatactgctgaagttggtgacgaaggtgaagtagacttt
aagaacgaagctaaatttgcacagcatatgaagaagggagaagctgttagtgaattcgcc
atgtcaaagaccatggcacagcaacgacagtatcttcccatattttcggttagagatgat
ttattacaggtaataagagaaaaccaggtgatagtggtggttggagaaactggttcggga
aagactactcagctcacacagtatcttcacgaggacgggtacactgtaaacggtatagta
ggttgcacccaaccaagacgtgtagcagctatgagtgttgcaaagagagttagtgaagag
atggaaacagagttgggcgataaagtggggtatgcaattcgttttgaagatgtaactggt
ccaaatactgttatcaagtacatgacggatggagtgctactgagagagacacttaaagat
tccgatctggataagtatcgtgtggtagtgatggatgaagcgcatgaaaggtcactcaac
acagacgtccttttcggaatactgaaaaaagttgttgctcggcgtcgtgatttcaaactg
atagtcacttcagcgacccttaatgctcaaaagttttccgatttctttgggagtgttcct
atattcaacattcctggaaggactttccctgtcaatattctctactctaaaagtccatgt
gaagactatgttgaagctgctgttaaacaggcaatgacgattcacattacgagcccacct
ggggacattctcatatttatgaccgggcaagatgagattgaagcggcgtgcttttctctc
aaggagagaatggaacagctgattgcatcatccaagagagacgtcacgaacctactgatt
ctccctatatactctcagctacctgctgacttgcaagcaaaaatattccagaaaccagaa
gatggagcacgtaaatgcattgttgccaccaatatcgctgaaacatcattgactgtggat
ggtatatactatgtgattgacacggggtatggaaagatgaaggtttttaatcctagaatg
ggtatggatgctctccaggttttccccattagtcgtgctgcctctgatcagcgtgcagga
agagctggaaggacagggccgggaacatgttacaggctgtatacagagagtgcatatcta
aacgagatgttgccgagtcccgtgccagagattcagcgaacaaatctgggtaacgttgtg
ttgttgttgaagtcgctgaaaatagacaacttgctagagtttgatttcatggacccacct
ccacaagagaacatcctcaactctatgtaccagctttgggtgttgggcgctcttagcaat
gtcggaggattaaccgatctcgggtggaagatggtggagttcccgttggatccacctctt
gcaaagatgctcttaatgggtgaacggcttgactgcatagacgaggtcttgacgatcgtg
tcaatgctttcagtaccttcagtgttcttcagaccgaaagagagagcagaagagagcgac
gccgcgagggagaagtttttcgtgcctgagtcagatcacctgacgctactcaatgtgtat
aagcaatggaaagagcacgactacagaggagactggtgcaatgaccattacctgcaagtc
aaaggtctgaggaaagctagagaagtacgatcccagcttctggatatcctcaagcaactc
aagataccgctcaagtcgtgtgggcctgattgggatatcgtgagaaaagccatatgctca
gcgtatttccacaactcagcgagattaaaaggtgtgggagagtacgtgaactgcagaact
gggatgccttgccatttgcacccgagcagtgcactgtatggtctgggatacacgcctgat
tatgtggtgtatcacgaactgatcttgaccacgaaagagtacatgcagtgtgctacatct
gttgagccgcattggctggctgagttgggacctatgtttttctcggtcaaggactcggat
acatcgatgctggagcataagaagaagcagaaggaagagaaaacagcgatggaggaagag
atggagaagctgagaagagatcaggcggaggcggaggtgagaagcaaagagagagagaag
aggaaaagggcaaagcagcagcaacaggtttcaggtcctggcatgaagaaaggcagcact
tacctcaggcctaagaagtttggtctctaa
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integrated database retrieval system
