Brassica napus (rape): 106410777
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Entry
106410777 CDS
T04128
Name
(RefSeq) pre-mRNA-processing protein 40B
KO
K12821
pre-mRNA-processing factor 40
Organism
bna
Brassica napus (rape)
Pathway
bna03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106410777
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bna03041
]
106410777
Spliceosome [BR:
bna03041
]
Complex A
U1 snRNP components
U1 related factors
106410777
Complex B
106410777
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
WW_2
Inhibitor_I66
Motif
Other DBs
NCBI-GeneID:
106410777
NCBI-ProteinID:
XP_048635380
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All DBs
Position
A5:21200307..21208781
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AA seq
995 aa
AA seq
DB search
MANNPHYPGIQPFQHPNASSIDLPRGFAPSMNFQHRPPIQAPPQSEQVAHLASQNFQYVG
RGGTTMNNGFPPQSYTPQLLQSMHHSVERPSQSNQGQHVPLGHPSLISQPNVPVASGTFL
PEPYLRTSDINMNGGPRALFSYQGATSFEHLRAPTQVTGPSSHSQAQQSAPISQANAPSS
IMNPAFEHPKVASSQPIPSQEAATDWVEHTSADGRRYFFNKKTKQSTWEKPVELMTLFER
ADAKTDWKEHSSPDGRKYYYNKVTKQSTWTMPEEMKIAREQAENASVQGLHAEGVVDASR
VLSRSDTASTAAPTGLPNQTSSTPPTSDTSEKLALTSDREQAASVPGSSSPVENVDQVQA
IADKTQELCDTAKTDNPSVTVMITSAATLVDKETVSTENSGDADDVSAKNTNQGSGTGPK
ESQKHVVDSERVDSQSEGKQIHQENISYTNKSEAVDVFKSLLKSANVGSDWTWEQAMREI
INDRRYGVLRTLGERKQAFNEFLAQMRKAAEEEKIARQLKRYEDFRRMLEESVELTPSTR
WSKAVTMLEDDERFKVVEREKDRRNIFEDHISDLKEKERVKAFEDRKRNIVEYRRFLESC
NFIKPNSQWRKVQDRLEVDERCSRLEKIDQLEIFQEYLRDLEREEEERKKIQKEELKKAE
RKHRDEFRGLIDEHIATGELTAKSSWRDYLVKVKDLPVYLAIASNSSGATPKELFEDAAE
DLKRKYHELKSRIKDVLKLRKVTLSTESTFDEFKVSVSEGISSPSIPDFKLKLVFDDLLE
RAKEKEEKEARKQTRNTEKLVDMLRSFKYITASSSWEDSKHLVEGTEKFRTIGDESFRKK
TFEDYISHLKEQAKRIKQNKKEHVREEHDREKDKYGREKERVRERDNRDHRKQGSADNYN
HDVDELHGKERRRSGRDSHSRHRERHTSVKENEADHYKESHKAGRGHKESRQQRGLVREA
EDEGREKRRRKEGDSEQTKRAEKEEELEDGECGRY
NT seq
2988 nt
NT seq
+upstream
nt +downstream
nt
atggctaataacccccactatcctggcattcagccattccagcatccgaatgccagttcc
atagatttaccccgaggctttgctccatccatgaattttcagcatcgtcctcccattcaa
gctcctccgcagtccgagcaagttgctcatttggcttctcaaaattttcaatatgttggg
cgaggcggcacaacgatgaacaatggatttccacctcagtcttatacgcctcagttacta
caatcaatgcaccattcggttgaaagacctagccaatcaaatcaggggcaacatgtgcca
ctaggacatccgtctctaatttcacagccaaatgtgccagttgcctctggtaccttcttg
ccggagccttacctacgaacttcagatattaatatgaatggtggccctagggcactcttt
tcttatcagggtgccacatctttcgaacatctgagggcaccaactcaagtcactggacca
agcagtcatagtcaggcacaacaaagtgcacctatcagccaggctaatgcaccctcttct
ataatgaatccagcatttgaacatccaaaggtagcttcttctcaacctataccttctcaa
gaggctgcaacagattgggttgagcatacctcggcggatggacggagatattttttcaac
aagaagacgaagcagtccacttgggagaagcctgttgagttgatgactctatttgagaga
gcagatgcaaaaactgactggaaagaacattcaagtcctgatggaagaaagtattattat
aataaggttaccaagcaatcaacatggacaatgcctgaggagatgaagattgctcgtgaa
caagcagaaaatgcatctgttcaagggctgcatgcagaaggcgttgttgatgcttctagg
gtgctgtctcgttctgatacagcatcgactgcagctccaactggtttaccaaaccaaaca
tcatctacgcctccaacatctgataccagtgagaaactagctcttacttctgatcgggag
caggcagcttcagttcctggaagctcttccccggtcgaaaatgttgatcaagttcaggca
attgcagataaaacacaagaattgtgtgatactgcaaaaactgataatccttctgtcact
gtgatgataacttctgctgctacattggttgacaaggaaacagtatcaaccgagaacagt
ggagatgcagatgacgtgtcagctaaaaacacaaatcaaggtagtgggactggaccaaaa
gaaagccaaaaacatgtggtggatagtgaaagagttgacagtcagtcggaaggcaaacag
attcatcaagagaatatttcttatacgaacaaatcggaagctgtggatgtcttcaaatca
cttttgaaatctgccaatgttggatctgactggacatgggagcaggccatgagagaaata
attaatgatagaagatacggggttctgaggactcttggagagcggaagcaagccttcaat
gagtttctagctcaaatgagaaaagcagcagaggaggaaaagatagccagacagctaaaa
cgatatgaagattttagaaggatgttagaggaaagcgtggagcttactccttctactcgg
tggagcaaggctgtgactatgttggaagacgatgagcgtttcaaagttgttgaacgagaa
aaagaccgtcgtaatatttttgaagatcatatcagtgacttaaaggagaaggagcgggtg
aaagcttttgaggatcgcaagcggaacattgttgaatacaggagatttttggaatcttgc
aatttcattaagcctaatagccaatggcgcaaagttcaggaccgtttagaagtggatgaa
agatgttcacgtcttgagaaaattgatcagctagaaatatttcaggagtatctgcgcgat
ctggagagagaagaagaggagagaaagaagatacaaaaggaagaactaaaaaaagcagag
cgaaagcatcgtgatgagttccgtggtctgatagatgaacatattgctacaggagagctt
actgccaaaagtagttggcgtgattatttagtgaaggtaaaagatttaccagtatattta
gcaattgcatcgaactcctctggcgctacaccaaaagagttatttgaagatgctgctgag
gatttgaaaagaaagtaccacgagctcaaatctcggataaaggacgtattgaagctgaga
aaggtaacgttatccactgaatcaacgtttgatgagttcaaagtctcagtttctgagggt
atcagttccccatctattcctgactttaaactgaagttagtgtttgatgatttgctggaa
agagcaaaggagaaggaagagaaggaagccagaaaacagactcggaatactgaaaaattg
gtggatatgcttcgctccttcaagtatataactgcctcttcatcctgggaggattctaag
catcttgttgaaggtactgaaaaattccgtaccataggggacgagagcttccggaagaag
acgttcgaggattacatatcgcacctgaaagaacaggcaaaaaggatcaaacagaacaag
aaggaacatgttagagaggaacatgacagggagaaggataaatacggaagagagaaggag
agagtgagagaaagagacaatagagatcatcgtaagcaaggttcagctgataattacaac
catgacgtggacgaactccatggaaaagaacgtagaagatccggaagagatagccatagt
agacatcgagaaagacatactagtgtgaaggaaaatgaggcagatcattacaaagaatct
cataaagctggtcgtggccataaggaatcaagacaacagcgaggtttggttcgggaagcc
gaggatgaaggcagggaaaagcggcgtagaaaagaaggagatagtgagcaaacaaagcgt
gcggaaaaggaagaagaacttgaagatggagaatgtggtaggtactaa
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