Brassica napus (rape): 106410992
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Entry
106410992 CDS
T04128
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 30 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
bna
Brassica napus (rape)
Pathway
bna03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106410992
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bna03041
]
106410992
03009 Ribosome biogenesis [BR:
bna03009
]
106410992
Enzymes [BR:
bna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106410992
Spliceosome [BR:
bna03041
]
Complex A
U1 snRNP components
U1 related factors
106410992
Complex B
106410992
Ribosome biogenesis [BR:
bna03009
]
Eukaryotic type
Pre-60S particles
Helicases
106410992
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
106410992
NCBI-ProteinID:
XP_013707097
UniProt:
A0A078IG64
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All DBs
Position
C9:complement(5343007..5346849)
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AA seq
594 aa
AA seq
DB search
MSSHDRRFADPNSYRQRSPAPVRSSQPMDPSAAPYNPRYSGGGGDVGGGGGGYRPAPVMS
GDGSGYGHYPSFHPPSNGFSVGRGGGRGGYGGYGGVRGGYGGGGRGGSGRRELDSVSLPK
QSFGNLVHFEKNFYVESPVVQAMTEQDVAMYRTEKDISVEGRDVPKPIKMFQDANFPDNI
LDAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQD
DGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGRQIHDLRRGVEIVIATP
GRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWSATWPRE
VETLARQFLRDPYKAIIGSADLKANQSINQVIEIVQTPEKYTRLLTLLKQLMDGSKILIF
VETKRGCDQVTRQLRMDGWPALAIHGDKNQTERDRVLSEFKSGRSPIMTATDVAARGLDV
KDIKCVVNYDFPTSLEDYIHRIGRTGRAGAKGMAMTFFTHDNAKFARELIKILQEAGQVV
PPTLSALVRSSGSGGGGGGGGRSFRSRGGGRGGFGDKRPRSTSNFVPHGGKRTW
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atgagctcccatgatcgcagattcgctgatcccaattcgtatcgtcaacgctctcccgca
ccggttcgttcgtctcagccgatggatccttccgccgcaccgtacaatccacgctacagc
ggcggcggcggcgatgttggtggaggaggaggaggatacagaccggctcctgtaatgtcc
ggcgacggttccgggtatggtcattacccgtcttttcacccgcctagtaatggcttctcc
gttggtcgcggcggaggaagaggcggttacggtgggtacgggggtgtgaggggtggatac
ggtggaggaggacgcgggggatcgggtagaagagagctggatagcgtttctcttccgaaa
cagagttttgggaatcttgttcatttcgagaagaatttctacgtggagagtcctgtggtg
caggcgatgacggagcaggatgttgctatgtataggactgagaaggatatatctgttgaa
gggcgtgatgttcctaagcctattaagatgttccaagatgctaactttccagataatatt
ctcgacgcaattgctaaactgggatttactgagccaacaccgatacaagctcagggatgg
ccaatggctttgaagggtagggatttgattggtattgctgagactggctctggtaagact
ctggcttacttgttaccagcgttggtccacgtcagtgcacaacctcggttaggtcaagat
gatggacccatcgttttaatattggcgcccaccagagaattagcagttcagattcaagag
gaatcaaggaagttcgggctgcgatctggtgttagaagcacttgtatctatggtggtgct
cctaaaggacgtcagattcacgatcttagaagaggtgttgagattgtaattgctacacct
ggtcgtttgatcgatatgttggagtgccaacacactaatttgaagagggtgacttacctt
gtgttggacgaggctgacagaatgttagacatgggatttgaaccccaaattagaaagatt
gtatctcagatccgacctgatagacagacactgctttggagtgcaacatggccacgagaa
gttgaaactctcgccaggcagtttctacgagatccgtacaaggccattattggatcagca
gatctaaaagctaaccagtctattaaccaagtaatcgagattgtacagacgccagagaaa
tacaccaggctccttacactgcttaagcagctaatggatggaagtaaaatcttaatcttt
gtggagacaaagagaggttgtgatcaagtgactagacaactgagaatggatggatggcca
gctcttgccatacacggtgacaaaaaccaaacggaaagagatcgtgtcttgtcagaattt
aagagcggaagaagcccgataatgactgccactgacgtagcagcaaggggacttgatgtg
aaggacataaagtgtgttgttaactatgatttcccaacttcattggaggactacatccac
aggattggtcgaactgggcgtgcaggggctaaaggaatggccatgacattcttcacacat
gacaatgctaagtttgcaagagagcttatcaagatccttcaagaagctggtcaagttgta
cctcccactctctctgccctagtccgatcttccggttctggtggtggtggtggtggaggt
ggacgtagtttcaggtcaagaggaggaggacgtggtggctttggagataaacggccaaga
tcaacctcaaactttgtacctcatggtggaaaaaggacttggtag
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