Brassica napus (rape): 106411204
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Entry
106411204 CDS
T04128
Name
(RefSeq) pre-mRNA-processing protein 40B-like
KO
K12821
pre-mRNA-processing factor 40
Organism
bna
Brassica napus (rape)
Pathway
bna03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106411204
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bna03041
]
106411204
Spliceosome [BR:
bna03041
]
Complex A
U1 snRNP components
U1 related factors
106411204
Complex B
106411204
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
WW_2
Motif
Other DBs
NCBI-GeneID:
106411204
NCBI-ProteinID:
XP_013707368
UniProt:
A0A078GHJ1
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All DBs
Position
C5:43618721..43627271
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AA seq
994 aa
AA seq
DB search
MANNPHYPGIQPFQHPNASSINLPRGFAPSMNFQHRPPIQAPQSEQVAHLASQNFQYVGR
GGTMMNNGFPPQSYAPQLLQSMHNSLERPSQSNQVQHVPLGHPSLISQPNVSVASGTFLP
EPYVQTSVVNMNGGPRALFSHQSATSFGHLRAPTQVTGPSSHSQAQQSAPISQDNAPSSI
TNPTFVHPKVASSQPIPFKEAATDWVEHTSADGRRYFFNKKTKQSTWEKPVELMTLFERA
DAKTDWKEHSSPDGRKYYYNKVTKQSTWTMPEEMKIAREQAENASVQGLHAEGVVDASKV
LSLSDTASTAAPAGLPSQTSSTFPTSDTSEKLALTSDWEQAASVPGSSSPVENVDQVQAI
ADKTSELCDTAKTDNPSATVMITSAATLVDKETVSTDNNGNADDVSAKNTNQGSGTGPEE
SQKHVVENERVDSQSEGKQIHQENFSYTNKSEAVDVFKSLLKSVNVGSDWTWEQAMREII
NDRRYGVLRTLGERKQAFNEFLAQMRKAAEEEKIARQLKRYEDFRRMLEECVELTPSTRW
SKAVTMLEDDERFKVVEREKDRRNIFEDHISDLKEKERVKAFEDRKRNIVEYRRFLESCN
FIKPNSQWRKVQDRLEVDERCSRLEKIDQLEIFQEYLRDLEREEEERKKIQKEELKKAER
KHRDEFRGLIDEHIATGELTAKTSWRDYLVKVKDLPVYLAIASNSSGATPKELFEDAVED
LKRKYHELKSQIKDVLKLRKVTLSTGSTFDEFRVSVSEGIGSPSIPDFKLKLVFDDLLER
AKEKEEKEARKQTRNTEKLVDMLRSFKYITASSSWEDSKHLVEGTEKFRTIGDESFRKKT
FEDYISHLKEQAKRIKQNKKEHVREEHDREKDKYGREKERVRERDNRDHRKQGSADNYNH
DVDELYGKERRRSGRDSHSRHRERHTSVKENEADHYKESLKAGRGHKESRQQRGLVREAE
DEGREKRRRKGGESEQTKRAEKEEELEDGECGRY
NT seq
2985 nt
NT seq
+upstream
nt +downstream
nt
atggctaataacccccactatcctggcattcagccattccagcatccgaatgccagttcc
ataaatttaccccgaggctttgctccatccatgaattttcagcatcgtcctcccattcaa
gctccgcagtccgagcaagttgctcatttggcttctcaaaactttcagtatgttgggcga
ggtggcacaatgatgaacaacggatttccacctcaatcttatgcgcctcagttactacaa
tcaatgcacaattcgcttgaaagacctagccaatcaaatcaggtgcaacatgtgccacta
ggacatccgtctctaatttcacagccaaatgtgtcagttgcctctggtaccttcttgccg
gagccttacgtacaaacttcagttgttaatatgaatggtggccctagggcactcttttct
catcagagtgccacatctttcggacatctgagggcaccaactcaagtcactggaccaagc
agtcatagtcaggcacaacaaagtgcacctatcagccaggataatgcaccatcttctata
acgaatccaacatttgtacatccaaaggtagcttcttctcaacctataccttttaaagag
gctgcaacagattgggttgagcatacctcggcggatggacggagatattttttcaacaag
aagacgaagcagtccacttgggagaagcctgttgagttgatgactctatttgagagagca
gatgcaaaaactgactggaaagaacattcaagtcctgatggaagaaagtattattataat
aaggttaccaagcaatcaacatggacaatgcctgaggagatgaagattgctcgtgaacaa
gcagaaaatgcatctgttcaagggctgcatgcagaaggcgttgttgatgcttctaaggtg
ctgtctctttctgatacagcatcgactgcagctccggctggtttaccaagccaaacatca
tctacatttccaacatctgataccagtgagaaactagctcttacttctgattgggagcag
gcagcgtcagttcctggaagctcttccccggtcgaaaatgttgatcaagttcaggcaatt
gcagataaaacatcagaactgtgtgatactgcaaaaactgataatccttctgccactgtg
atgataacttctgctgctacattggttgacaaggaaacagtatcaaccgataacaatgga
aatgcagatgacgtgtcagctaaaaacacaaatcaaggtagtgggactggaccagaagaa
agccaaaaacatgtggtggaaaatgaaagagttgacagtcagtcggaaggaaaacagatt
catcaagagaatttttcttataccaacaaatcggaagctgtggatgtcttcaaatcactt
ttgaaatctgtcaatgttggatctgactggacatgggagcaggcgatgagagaaataatt
aatgatagaagatacggggttttgaggactcttggagagcggaagcaagccttcaatgag
tttctagctcaaatgagaaaagcagcagaggaggaaaagatagccagacagctaaaacga
tatgaagattttagaaggatgttagaggaatgcgtggagcttactccttctactcggtgg
agcaaggctgtgactatgttggaagacgatgagcgtttcaaagttgttgaacgagaaaaa
gaccgtcgtaatatttttgaagatcatatcagtgacttaaaggagaaggagcgggtgaaa
gcttttgaggatcgcaagcggaacattgttgaatacaggagatttttggaatcttgcaat
ttcattaagcctaatagccaatggcgcaaagttcaggaccgtttagaagtggatgaaaga
tgttcacgtcttgagaaaattgatcagctagaaatatttcaggagtatctgcgcgatctg
gagagagaagaagaggagagaaagaagatacagaaggaagaactaaaaaaagcagagcga
aagcatcgtgatgagttccgtggtctgatagatgaacatattgctacaggagagcttact
gccaaaactagttggcgtgattatttagtgaaggtcaaagatttaccagtatatttagca
attgcatcgaactcctctggcgctacaccaaaagagttatttgaagatgctgttgaggat
ttgaaaagaaagtaccacgagctcaaatctcagataaaggacgtattgaagctgagaaag
gtaacgttatccactggatcaacgtttgatgagttcagagtctcagtttctgagggtatc
ggttccccatctattcctgactttaaactgaagttagtgtttgatgatttgctggaaaga
gcaaaggagaaggaagagaaggaagccagaaaacagactcggaatactgaaaaattggtg
gatatgcttcgctccttcaagtatataactgcctcttcatcctgggaggattctaagcat
cttgttgaaggtactgaaaaattccgtaccataggggacgagagcttccggaagaagacg
ttcgaggattacatatcgcacctgaaagaacaggcaaaaaggatcaaacagaacaagaag
gaacatgttagagaggaacatgacagggagaaggataaatacggaagagagaaggagaga
gtgagagaaagagacaatagagatcatcgtaagcaaggttcagctgataattacaaccat
gacgtggacgaactctatggaaaagaacgtagaagatcgggaagagatagccatagtaga
catcgagaaagacatactagtgtgaaggaaaatgaggcagatcattacaaagaatctctt
aaagctggtcgtggccataaggaatcaagacaacagcgaggtttggtgcgggaagccgag
gatgaaggcagggaaaagcggcgtagaaaaggaggagagagtgagcaaacaaagcgtgcg
gaaaaggaagaggagcttgaagatggagaatgtggtaggtactaa
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