Brassica napus (rape): 106411539
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Entry
106411539 CDS
T04128
Name
(RefSeq) pentatricopeptide repeat-containing protein At2g15820, chloroplastic
KO
K27936
pentatricopeptide repeat-containing protein, chloroplastic
Organism
bna
Brassica napus (rape)
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bna03041
]
106411539
Spliceosome [BR:
bna03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
106411539
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LAGLIDADG_2
PPR_2
PPR
PPR_3
PPR_long
PPR_1
HAT_Syf1_CNRKL1_N
DUF1955
Motif
Other DBs
NCBI-GeneID:
106411539
NCBI-ProteinID:
XP_013707778
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Position
A7:3658041..3660737
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AA seq
785 aa
AA seq
DB search
MIATRACDFSSPLSSASPSGAFVTVTIPNFNFFSPSLNPNIIRHRSSSSRRLLRRLSFSR
NETQSFPLPFAANSASHRSRTFVEHVAGTKESPHQTIEVYDFGDLESARNDLRNVATRRV
ETDVEVREIEDLPEEWRRSKLAWLCKEVPSHKAVTLVRLLNAQKKWVRQEDATYICVHCT
RIRENETGFRVYRWMTQQNWYRFDFGLATKLADFLGKERKFTKCREVFDDIMNQGRVPSE
STFHILVVAYLSSSEEGCFEEACSVYNRMIQLGGYRPRLSLHNSLFRALVSKQGGPSSDD
VRQAEFIFHNVVTTGLEVQKDIYSGLIWLHSCQDEVDIERINYLREEMRKAGFEESKEVV
VSLLRAYAKEGGVEEVERTWLELLGLDCGIPSQAFVYKIEAYAKVGDFARALGIFREMEK
QLGGATVSGYHKIIEVVCKVHQVELAESLLEEFVETGKKQLLPSYVEIVKMYFDLGSHEK
LEKAFVECLEKCQPNQTIYNIYLDSLVNIGNLERAGDVFDEMKNNGTINVNARSCNTVLK
GYLDSGNHVKAKKIYELMSLKKYEVQTPLMEKLDYILSLVRKEVKKPLSMKLSKEQREVL
VGLLLGGLRVESDRERKSHKIMFEFREKSQAHLILRQHIHDQFREWLPHSEEEDIPLEFS
SISHSCFGFYADNFWPNGRPEIPKLIHRWLSPESLAYWYMYSGYRTSSGDVILRLKGSVE
GVEKVVKALRAKSMECRVKKKGNVFWIGLQGTNSVLFWKLIEPHVLDDMKDYLRPAYEAI
DTDGD
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atgatagctactagagcttgcgacttctcttcacctctctcctccgcctctccttccgga
gccttcgtcaccgtcaccatcccgaacttcaacttcttctctccctccctaaaccccaac
atcatccgccaccgcagcagctcctcgcgtcgcttactccgccgtctctccttcagtcga
aacgaaactcaatcctttccactgccattcgctgctaattccgcttctcaccgtagcaga
actttcgtcgaacacgttgcaggcactaaagaatcaccacaccaaaccatcgaagtctac
gatttcggagatttagagtctgctaggaacgatttgaggaacgtcgcgactcgtagagtc
gagactgatgtggaagtgagagagatagaagacttgccggaagagtggcgccgctccaag
ctcgcctggctgtgtaaagaagttccgtcgcataaagccgtgacgcttgtgaggctcttg
aatgctcagaagaaatgggttcgtcaagaagacgctacttacatctgtgtccattgcaca
cggattcgcgagaacgaaacaggattcagagtgtatagatggatgacgcagcagaactgg
taccggtttgatttcggtttagccacaaagctagctgatttcttagggaaagagaggaag
ttcacgaaatgtcgagaggtgttcgatgatattatgaatcaaggacgtgttccaagcgaa
tccacgtttcacattcttgtagttgcttatctaagtagctcagaggaaggttgtttcgaa
gaagcctgtagtgtttacaatagaatgattcaacttggaggttacagaccgcgtcttagt
ctgcataactctttgtttagagctttggttagcaaacagggagggccttcgagtgatgac
gttaggcaagctgagtttatcttccataacgttgtgacgaccgggcttgaggtgcagaaa
gatatctatagcgggctaatctggctgcatagttgtcaagacgaagttgatatagagagg
ataaactatctaagagaagagatgaggaaggccggttttgaggagagtaaagaagtagtg
gtttcgttactcagagcgtatgctaaggaaggaggagtggaagaagttgagaggacatgg
cttgaattgcttggtttggattgcggtataccttctcaagcgtttgtgtacaaaattgaa
gcttatgcaaaagtaggcgattttgcgagagctttggggatatttagggagatggagaag
cagttaggtggtgcaacggtttctggataccacaagatcattgaagttgtatgtaaagta
catcaagtggaacttgcggaatctctcttagaagagtttgtagaaactgggaagaagcag
cttctaccttcatacgtggagatagtcaaaatgtactttgatttgggttcacatgagaaa
ctggagaaggcttttgttgagtgcttggagaaatgtcaacctaaccagactatatataac
atatacttggattcattggttaatataggtaaccttgagagagcaggggacgtttttgat
gaaatgaaaaacaatgggacaatcaatgtgaatgctagatcctgcaacaccgttttgaaa
ggatacttggattctggaaatcatgtgaaggcaaagaagatatatgagctgatgagtttg
aagaagtacgaagtccagacaccgcttatggaaaagcttgattatatccttagcttggtg
agaaaagaagtgaagaaaccgttgagcatgaagctaagcaaagaacagcgcgaggtattg
gtgggtttgctgttaggtggtttgcgagtggaatcagacagagagaggaagagtcacaag
atcatgtttgaattcagagagaagtctcaagctcatctgatattgagacaacacatacat
gatcagttccgtgagtggttgcctcattcggaggaggaggatataccattagaattctcc
tccatttctcattcatgctttgggttttacgctgataatttctggccaaatggtcgacct
gagattcccaaactgattcatcggtggctctcgcctgagtcactggcttattggtatatg
tacagtggatatagaacatcatcaggagacgttatcttgaggttgaagggaagtgtagaa
ggtgttgagaaggttgtgaaggctctgagagctaaatctatggaatgtcgggttaagaag
aaaggaaacgttttctggattgggcttcagggaacaaactcggttttgttctggaagcta
atagagcctcacgtcttagatgacatgaaagattatctaagacccgcttatgaggcaatc
gacaccgatggggactaa
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