Brassica napus (rape): 106412007
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Entry
106412007 CDS
T04128
Name
(RefSeq) E3 ubiquitin-protein ligase SINAT4 isoform X2
KO
K04506
E3 ubiquitin-protein ligase SIAH1 [EC:
2.3.2.27
]
Organism
bna
Brassica napus (rape)
Pathway
bna04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
106412007
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
bna04121
]
106412007
Enzymes [BR:
bna01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
106412007
Ubiquitin system [BR:
bna04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
SINA (Seven in absentia) proteins
106412007
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sina_TRAF
Sina_ZnF
Sina_RING
zf-C3HC4_2
DUF7567
zf-C3HC4_3
FAIM1
Motif
Other DBs
NCBI-GeneID:
106412007
NCBI-ProteinID:
XP_013708343
UniProt:
A0A078FPK3
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Position
A8:complement(15403842..15406036)
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AA seq
319 aa
AA seq
DB search
METESMDCESSTRSISNDNGTYHFSSTKNHAAAAVVTNIVGPTTTAAATSVYELLECPVC
TFSMYPPIHQCHNGHTLCSTCKVRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYNL
GCPEIFPYYSKLKHESLCNFRPYSCPYAGSECGVVGDIPFLVSHLRDDHKVDMHAGSTFN
HRYVKSNPREVENATWMLTVFQCFGQYFCLHFEAFQLGMGPVYMAFLRFMGDEEEARSYS
YSLEVGGSGRKLTWEGAPRSIRDSHRKVRDSNDGLIIQRNMALFFSGGDRKELKLRVTGK
IWKEQHSPDSGLCIPDLSS
NT seq
960 nt
NT seq
+upstream
nt +downstream
nt
atggagacggagagtatggactgcgaatcgtcgacgagaagcatctctaacgataacgga
acttaccatttctcttccacgaagaatcacgccgctgctgccgtcgttaccaatatagtc
ggtccgacgacaacggctgctgccactagcgtctacgagcttctggagtgtcctgtctgt
accttttctatgtaccctcctatccatcagtgtcataatgggcacacgttatgctcgact
tgtaaagtgagagtgcacaaccggtgtcccacgtgtagacaagagcttggagatataaga
tgtttagctctcgagaaagtagccgagtcgcttgagctgccttgcaagtattacaacctc
ggatgccctgagatttttccttactacagcaaactaaagcacgagtctctctgtaacttc
agaccgtactcttgtccttacgctggctccgagtgcggtgtcgtaggggacatccctttc
cttgtatcccatctcagggatgatcacaaagttgacatgcacgctggctccacttttaac
caccgctacgtcaaatctaatcctcgtgaagtagagaacgctacttggatgctaactgtg
tttcaatgctttgggcaatacttctgcctccattttgaagcgttccagctcgggatgggt
ccggtgtacatggcgttcctgagattcatgggggacgaggaagaagcaaggagttatagc
tacagtttagaagtgggagggagtgggaggaaactaacgtgggaaggagcaccgagaagc
atcagagatagccacaggaaagtaagagacagcaacgacggtctcatcatccaaagaaac
atggctctcttcttctccggtggtgacaggaaagagcttaaacttagagtcactggtaaa
atctggaaagagcaacatagtccagattctgggctctgcataccagacctatcttcatga
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