Brassica napus (rape): 106412038
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Entry
106412038 CDS
T04128
Name
(RefSeq) THO complex subunit 4C-like isoform X1
KO
K12881
THO complex subunit 4
Organism
bna
Brassica napus (rape)
Pathway
bna03013
Nucleocytoplasmic transport
bna03015
mRNA surveillance pathway
bna03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106412038
09122 Translation
03013 Nucleocytoplasmic transport
106412038
03015 mRNA surveillance pathway
106412038
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106412038
03041 Spliceosome [BR:
bna03041
]
106412038
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
106412038
TREX complex
106412038
Spliceosome [BR:
bna03041
]
Complex C
Other components
EJC/TREX
106412038
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
106412038
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
RRM_3
Motif
Other DBs
NCBI-GeneID:
106412038
NCBI-ProteinID:
XP_013708706
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All DBs
Position
A7:complement(22528945..22531631)
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AA seq
278 aa
AA seq
DB search
MADSLSMSLDEMVKRSKAAKKSAGKGVSRGGAKGAGRGAGGPVRRGPLAVKARPSSFSNK
LNRRKKNLPWQNGLFEESMRSVGVTGIEVGTTVYVTNLDQGVTNEDIRELFGEIGEMKRY
AIHYDQNGRPNGSAEVVYMRRSDAFQAMKRYNNVLLDGRSMKLEILGGNNEVAPVAARVN
VTGLNGRMKRTVSIGQGIRGGRGRGRSAAPSMRSLPIGNQQGGGVRSGRGGFRGRGRGQA
GGGRGNKGGRGGKKAVEKSAEELDKDLETYHAEAMNIS
NT seq
837 nt
NT seq
+upstream
nt +downstream
nt
atggcggactcattgagtatgtctctagatgaaatggttaagaggagcaaggctgctaaa
aagtctgctggtaaaggagtttcccgaggtggagctaaaggtgctggaagaggagctggt
ggacctgttcgcagaggtcctcttgctgtgaaagctaggccgtcatcattctctaacaag
cttaaccgcaggaagaagaacttgccatggcagaatggtttgtttgaagaaagcatgaga
tctgttggagtaactggaatagaggttggaactactgtttatgttaccaaccttgatcag
ggagtcacaaatgaagatatcagggaactctttggtgagattggagagatgaaaagatat
gctattcactatgaccagaacgggcgtccaaatggctcggcagaagttgtgtacatgaga
agaagtgatgcatttcaagctatgaagagatacaacaatgtcttgttggatggaaggtca
atgaaattggagattcttggtggaaacaatgaggtcgctcctgttgcagctcgtgttaat
gtaaccggattgaacggaaggatgaagagaactgtttccatcggacaaggaattagaggt
gggagaggaagaggaagaagtgcagctccttctatgagaagccttccaattggaaaccaa
caaggaggtggtgtaagaagtggccgaggagggtttcgtggtagaggccgaggccaagcc
ggtggtggcagagggaacaaaggcggccgaggcggaaagaaggcggtggagaagtcggct
gaagaactagacaaggatctcgaaacatatcacgcagaagcaatgaacatctcttga
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