Brassica napus (rape): 106412057
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Entry
106412057 CDS
T04128
Name
(RefSeq) exosome complex component RRP45A
KO
K03678
exosome complex component RRP45
Organism
bna
Brassica napus (rape)
Pathway
bna03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106412057
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106412057
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
106412057
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
NFACT-R_2
Motif
Other DBs
NCBI-GeneID:
106412057
NCBI-ProteinID:
XP_013708396
UniProt:
A0A816UMX8
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Position
C8:40480861..40483368
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AA seq
440 aa
AA seq
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MEGRLANMWRLTVNESKFVETALQSEVRVDGRGLYDYRKLTIKFGKEYGSSEVQLGHTHV
MGFVTAQLVQPYKDRPNEGSLSIFTEFSPMADPSFEPGRPGESAVELGRIIDRGLRESRA
VDTESLCVLAGKKVWSVRIDLHILDNGGNLVDAANIAALAALMTFRRPDCTVGGENNQEV
IIHSLEEREPVPLIIHHLPIAFTFGFFNKGNIVVMDPTYIEEEVMCGRMTVTVNANGDIC
AIQKPGEEGVNQSVILHCLRLASSRAAATTKIIREEVEAYNREKSLQKVKRHPTLAKPEV
SGPIVVVKEGHKMSEDEEIAAEISREHVERLNLSSVELKSSKEQEAVAASPGNFKGGPSN
WDPYTEAMDVDSLKASLASKGESVTKSTIKKKTNDSGNVQKEVTGDLEMKDTAEATKHKS
GEMTLKDAVKRKKKRKNKSS
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atggaggggagattggctaatatgtggaggttgacggtgaacgaaagtaagttcgtggag
acagcgttgcagtccgaggtcagagtagatggtcgtggtctttatgattaccgcaagctt
actattaagtttggcaaagaatatggtagctcagaagttcaacttggtcacactcatgtg
atgggttttgtgactgctcagctggttcagccttacaaagacagacctaatgaaggctct
ctatctatcttcactgagttttctcctatggctgatccgtcctttgagcctggtcgtcct
ggcgaatctgctgtagagcttggacgtattatagaccgtggtctaagagagagtcgtgcg
gtggatacagagtcactctgcgttctagctggaaagaaggtctggtctgttcgcattgat
cttcacatcttagacaatggagggaacttggttgatgctgcaaatattgcggcgttagca
gcgcttatgacgtttagaagacctgactgcactgtaggaggagagaacaatcaagaagtt
atcattcattcactagaggaaagggagccagtcccactgataatacatcatctccctata
gccttcacgtttggatttttcaacaaaggcaacattgtggtgatggacccaacttatatt
gaagaagaggttatgtgcgggaggatgactgtgacagtcaatgctaatggagatatatgc
gctatccagaaacctggagaagaaggcgtgaaccagagtgtgatccttcattgcttgcgt
cttgcttcttcaagagctgctgcaacaactaagataatcagagaagaggttgaagcgtat
aaccgtgagaagagcttacagaaggtgaagcgacatcctactctggctaaacctgaagtt
tctggacctattgtagttgtgaaggagggacataagatgtctgaagatgaggaaatagct
gcagagatatctagggaacatgttgaaagattaaacctctcttcagttgaactcaaaagc
agtaaggaacaggaagctgttgctgcttctcctggcaacttcaaaggcggtccatcaaac
tgggatccttacacggaagctatggatgttgattcactgaaagcttcacttgcttcaaaa
ggagagtcagtgactaagtcaacgatcaagaaaaagacgaacgattctggaaatgtgcag
aaagaagtaacaggagatttagagatgaaagatacagctgaggctacaaaacacaagagt
ggagagatgacactcaaagatgctgtcaaacgtaagaagaagcggaaaaacaaaagcagt
taa
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