Brassica napus (rape): 106412231
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Entry
106412231 CDS
T04128
Name
(RefSeq) vacuolar protein sorting-associated protein 35B isoform X1
KO
K18468
vacuolar protein sorting-associated protein 35
Organism
bna
Brassica napus (rape)
Pathway
bna04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
106412231
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
bna04131
]
106412231
Membrane trafficking [BR:
bna04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Retromer subcomplex
106412231
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps35
Motif
Other DBs
NCBI-GeneID:
106412231
NCBI-ProteinID:
XP_048603666
LinkDB
All DBs
Position
C2:complement(25943831..25950312)
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AA seq
778 aa
AA seq
DB search
MRRLGGVEDEEKWLAEGIAGIQHNAFFMHRALDANNLREVLKYSALMLSELRTSNLSPQK
YYDLYMRAFDQLRQLEIFLRDESRHGLPVVDLYLLCTVGSVYIKSKQAPSKDVLKDLVEM
CRGVQHPIRGLFLRSYLAQVSRDKLPEIGSDYQGDANTVMDAVEFVLQNFTEMNKLWVRI
QHQGPGTVREKQEKERNELRDLVGKNLHVLGQIEGVHLEMYKETVLPRILEQVVNCKDDF
AQYYLMECIIQVFPDEYHLQTLETLLAACTQLMPTVDTKIVLTQLMDRLSNYAVSSPDVL
HEFLQVEAFAKLNNAIGKVIDTQIEMPIVGAMTLFVSLLTFALRVHPDRLDYVDQVLGAC
VVKLSSGPKLEDARAMKQVVALLSAPLEKYNDKVTALTLSNYPRVMDHLDDGTNKVMAML
IIQSIMKNNSCISTADKVEVLFEVIKGLIKDLDGNATEELEEEDFQEEQNSVARLINMLD
NEEPEEMLKIICVVRKHLMTGGTRRLPFTIPPLIFSALRLVRQLESQGGDITGEDLPATP
RNIFQILNQTIEVLSSVPCPELALRLYLQCAEAASDCDLEPVAYEFFTQAFILYEEEIAD
SEAQVTAIHLIVGTLQRINVFGVENRDTLTHKATGYSARLLKKPDQCRAVYACSHLFWVD
DLDGIKDGERALLCLRRALRIANAAQQMANATRGSSGPVTLFVEILNKYIYVYEKGNPHI
TPSDIQSLIELINTEMQSDNNGNTRTHSDPFFTSTLRYMRFQKQKGGLMGDKYELIKL
NT seq
2337 nt
NT seq
+upstream
nt +downstream
nt
atgaggaggctgggcggagtagaagacgaggagaagtggctggcggaaggaatcgcggga
atccagcacaacgctttcttcatgcatcgcgccttggacgcgaacaatctcagagaagtc
ctcaagtactccgcgctcatgctatctgagctccgcacctccaacctctctcctcagaaa
tactacgatctctatatgcgagctttcgatcagttgaggcagttggagattttcttgagg
gatgagagcaggcatggcttacctgtggttgatttgtatctgctatgtacggtagggtct
gtttatatcaaaagcaagcaggctccttctaaggatgttcttaaggatctcgtggagatg
tgccgaggtgttcaacatcctattcgtgggctctttctgaggagttatcttgcccaagtg
agcagggataagttacctgagattggttcagactaccaaggagatgcaaatactgtgatg
gatgctgtggagtttgtgctacaaaatttcactgagatgaataagctctgggttcgaatt
cagcatcagggacctggaacagttcgagagaagcaagagaaagagaggaacgaacttcgt
gatcttgttgggaaaaatttgcacgttctaggacaaatagaaggtgttcaccttgagatg
tacaaagagactgttcttccaaggatcttagagcaggtcgtcaactgtaaagatgatttt
gctcagtattatctgatggagtgcataattcaagtctttcctgatgagtatcacttgcag
actcttgagacacttttggctgcttgtactcaactgatgccaacagtggacaccaagata
gtgttaactcaactgatggaccggctgtcaaactatgctgtctcaagtccagatgtttta
cacgaatttttgcaagtggaagcttttgctaaactgaacaatgcaattggaaaggtgata
gatacacagattgagatgcctattgttggagctatgacgctgtttgtctctcttctgact
tttgcactccgggttcatcctgatcggctcgactatgtggatcaagtattgggcgcatgt
gtagttaaactttccagtgggcccaagctggaggacgcccgtgcaatgaaacaagttgtt
gcacttctgagtgctcctttagaaaaatacaatgacaaagttacagctcttacactatca
aattatccacgagtcatggaccatcttgatgatggaacgaataaagtaatggcaatgctt
ataattcagagtataatgaaaaacaactcgtgtatttcaactgctgataaggttgaggtg
ttgtttgaagtgataaaaggacttataaaggatttggatggaaacgctacagaggagctt
gaagaagaggatttccaggaggaacaaaattcagtagcccgactgataaatatgcttgat
aatgaagaaccggaggagatgctaaagattatatgtgttgtgagaaagcatcttatgaca
ggaggaactagacgcctgccttttaccattcccccgcttattttttctgctctcaggttg
gtcaggcagctagaatcccagggtggagatataactggagaagatctcccagcaaccccg
aggaatatttttcagattctcaaccagacaatcgaggttctttcgtcagttccatgtcct
gaactcgctttaaggctctacctccagtgcgctgaggccgcaagtgattgtgatcttgag
cctgttgcttatgagtttttcactcaagcatttatattatacgaggaagaaatcgcggac
tccgaggcacaggtcactgcaattcacctgattgttggaaccttgcaaaggatcaatgtc
tttggtgtcgaaaacagagacaccttgacacataaagcaaccgggtactcagcaaggctt
ttaaagaagcctgatcagtgtcgagcggtttatgcatgttctcacctcttctgggtcgat
gatctagatggcataaaagatggagaaagagctcttctatgtttaagacgtgcactgagg
atagcaaacgcagcccaacaaatggctaatgcaacccgaggcagcagcggaccagtcacg
ctgtttgtcgaaatcttgaacaagtacatatatgtttatgagaaagggaatccacatata
accccatctgatatacagtctctgatagagttgatcaacacggagatgcaaagcgacaac
aacggtaacacaagaacccactcagatcctttctttacaagcacattgcgttacatgagg
ttccaaaaacagaaaggtggcttgatgggtgacaaatatgaactcatcaagttgtga
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