Brassica napus (rape): 106413372
Help
Entry
106413372 CDS
T04128
Name
(RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1-like
KO
K14485
transport inhibitor response 1
Organism
bna
Brassica napus (rape)
Pathway
bna04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
106413372
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
bna04121
]
106413372
Ubiquitin system [BR:
bna04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
106413372
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
LRR_4
F-box-like
F-box
LRR_NXF1-5
LRR_At1g61320_AtMIF1
Motif
Other DBs
NCBI-GeneID:
106413372
NCBI-ProteinID:
XP_013709616
LinkDB
All DBs
Position
C8:complement(41610026..41613148)
Genome browser
AA seq
595 aa
AA seq
DB search
MYKRAALSFPEEVLEHVFSLVHVDKDRNSVSLVCKSWYEIERWCRRRVFIGNCYAVSPAA
VIRRFPRARSVELKGKPHFADFNLVPEGWGGYVYPWIEAMSASYTWLEEIRLKRMVVSDE
CLELIAKSFKNFKVLVLSSCDGFSTDGLAAIASTCRNLKELDLRESDVDDVSGHWLSHFP
DSYTSLVSLNISCLVSEVSFSALERLVCRSPNLKSLKLNRAVPLEKLATLLQRAPQLEEF
GTGVYSAEVRPDVLSGLSVAISGCKKLKWLSGFWDALPAYLPAVYSVCSGLTTLNLSYAT
VQSYDLVKLLSQCPKLQRLWVLDYIEDDGLEMLALTCKDLRELRVFPSEPFVMEPNVALT
EQGLVSVSAGCPKLESVLYFCRQMTNAALVTIARNRPNMTRFRLCIIEPKAPDHLTLEPL
DVGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGC
ESLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCPVSFGACKLLGQKMPKLNVEVIDE
RGPPDSRPESCPVERVFIYRTVAGPRFDMPGFVWNMDQQHSAMRFSRQIITTNGL
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
atgtataagcgagcggccttatcgtttcccgaggaagttctggagcacgtgttctcctta
gtccacgtggacaaggacaggaactcggtgtctctggtgtgcaagtcgtggtacgagatc
gagcggtggtgcaggaggagagtcttcatcgggaactgctacgccgtgagcccggcggcg
gtgatacggaggttcccgagggcgagatccgtggagctgaaggggaagccgcacttcgcg
gacttcaatctggtgccggaggggtggggagggtacgtgtacccgtggatagaggcgatg
tcggcgtcgtacacgtggctggaggagataaggctgaagaggatggtggtgagcgacgag
tgcttggagcttatagccaagtcgtttaagaattttaaggtgctcgtgctttcctcgtgc
gatggattctccacggatgggctcgctgctatcgcttccacttgcaggaatctgaaagag
cttgatttgcgtgagagtgatgttgacgacgttagcgggcactggcttagccacttccct
gattcatacacttctttggtatcgctcaatatctcatgcttagtctccgaggtcagtttc
tctgctctggaaaggctggtgtgtaggtctcccaacctcaaatcacttaagcttaaccga
gctgttcctcttgagaagctggctactctacttcaaagagctcctcagctggaggaattt
ggcaccggtgtgtacagtgctgaagtgcgtccggatgtgctctctggtttgtctgtagct
atctctgggtgcaaaaaactgaagtggttatctgggttttgggatgctcttcctgcgtat
cttcctgcagtttattcggtttgcagtggacttacaactttgaacctgagttatgcaaca
gtccagagctatgatcttgtcaagcttcttagtcaatgtcctaaattgcagcgcctctgg
gtgttggactacatcgaggatgatggtcttgaaatgcttgctctaacctgcaaggacctt
cgagagctgagggtgtttccgtccgagccttttgtgatggagccaaacgttgcgttgacg
gaacaggggcttgtctccgtctccgcaggctgtccgaaactagagtcggttctctacttc
tgccgtcaaatgaccaatgctgcgctggtaaccattgctaggaaccgtcccaacatgact
cgcttccgtttgtgcatcattgagccgaaagcccctgaccatctgactctagagccactg
gatgtgggatttggagccatagtggagcactgcaaagatctccggcgtctctccctgtcg
gggctgttgaccgacaaggtcttcgagtacattgggacgtatgcaaagaagatggagatg
ctctcagtggcgtttgcaggagacagtgacttggggatgcatcatgttctgtcagggtgc
gagagcttgaggaagctagagataagggactgcccctttggagacaaggcgcttttggca
aatgcttcgaagctggagacaatgcgatctctttggatgtcttcgtgtcccgtgagtttt
ggagcctgcaagttgttaggacagaagatgccaaagctcaatgtggaagtgatcgatgaa
aggggtccgcctgactcgagacccgagagctgccctgttgaaagagtgttcatataccga
acagtggcgggtcctcggtttgacatgcctggtttcgtctggaacatggaccaacaacac
tcagcaatgaggttttccaggcaaatcatcactactaacgggttatag
DBGET
integrated database retrieval system
