Brassica napus (rape): 106414586
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Entry
106414586 CDS
T04128
Name
(RefSeq) polygalacturonase
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Module
bna_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106414586
Enzymes [BR:
bna01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
106414586
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GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
DUF7460
Motif
Other DBs
NCBI-GeneID:
106414586
NCBI-ProteinID:
XP_013710671
UniProt:
A0A816VFT9
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Position
C8:complement(40164453..40167506)
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AA seq
388 aa
AA seq
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MSSPVLIILLLLLSISLSSAQTYNILSYGAKPDGKTDSTKALTAVWAKACASVKPVTISI
PKGRFLLRSIVFDGAKCKRKSVTFRIQGTLVAPSDYRVIGNGNYWIFFQHLDGLSVYGGV
LDAQGASLWSCKKSGQNCPSGATSIGFQSSSNVVISGLTSLNSQMFHVVINGCRNVNIQG
VKVSADGNSPNTDGIHVQSSSTVSILNSKISTGDDCVSIGPGTNGLWIENVACGPGHGIS
IGSLGKESVEAGVQNVTVKTATFTGTENGVRIKSWARPSNGFAKNIRFQRCVMNNVQNPI
VIDQNYCPGNENCPNQVSGIKISDVMFFDIHGTSATQVGVKFDCSSKKPCTGIRLQDVKL
TYQNKPAMADCSHAGGTEAGFQQPNSCL
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctccagttctcataattctcctcttacttctctcaatctcattgtcctcagct
cagacctacaacattctatcttacggagccaaaccggacggtaaaaccgactctaccaag
gccttaaccgctgtgtgggccaaagcctgcgcctcagtcaagccggtcaccatatctatc
cctaagggacggtttttattaagaagcattgtatttgatggagccaagtgtaaacgcaag
tcagtcacgttccgtatccaaggtacacttgtggctccgtcggattatagagtcattggt
aacggaaactactggattttcttccagcatctcgacggcctctccgtctacggtggagtt
cttgacgctcagggagcttctctatggtcttgcaagaagtccggccagaattgccctagt
ggtgctacgagcatagggtttcagagctcaagcaacgtggtgatctcagggctaacgtca
ctcaacagtcagatgtttcacgtcgtgattaacggctgccgtaacgtaaatatacaagga
gtcaaagtttctgctgatggaaacagtccaaatactgacggcatccacgtccagtcatcc
tccaccgtctccatcctcaactcaaaaatatccaccggcgatgattgtgtatccatcggt
cctggaactaatggcctctggatcgaaaacgttgcttgtggccctggccatggtatcagc
attgggagcttgggaaaagaaagtgtagaggcaggtgtacagaacgtaacagtaaaaacg
gctacgtttacaggaacagagaatggggtgagaataaagtcatgggccaggcccagtaat
ggattcgctaagaacatccgtttccagcgttgcgttatgaacaacgtacagaacccaata
gtcattgaccaaaactactgtcctggcaacgaaaactgccctaaccaggtttctggaata
aaaatcagcgatgtaatgttcttcgacatccacgggacatcggcaacacaagttggagtg
aaatttgattgtagctctaagaagccgtgtaccggaatcagacttcaagacgtgaagcta
acataccagaataaaccggcaatggcagattgtagccatgcaggagggactgaggctggg
tttcaacagcccaacagttgtctatga
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