Brassica napus (rape): 106415087
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Entry
106415087 CDS
T04128
Name
(RefSeq) splicing factor 3B subunit 3 isoform X1
KO
K12830
splicing factor 3B subunit 3
Organism
bna
Brassica napus (rape)
Pathway
bna03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106415087
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bna03021
]
106415087
03041 Spliceosome [BR:
bna03041
]
106415087
03036 Chromosome and associated proteins [BR:
bna03036
]
106415087
Transcription machinery [BR:
bna03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
106415087
Spliceosome [BR:
bna03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
106415087
Complex B
106415087
Complex C
U2 SnRNP specific factors
106415087
Chromosome and associated proteins [BR:
bna03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
106415087
TFTC complex
106415087
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
CPSF_A
PmbA_TldD_1st
Motif
Other DBs
NCBI-GeneID:
106415087
NCBI-ProteinID:
XP_013711157
LinkDB
All DBs
Position
A5:complement(25118345..25126100)
Genome browser
AA seq
1356 aa
AA seq
DB search
MAAPEDESSAQSQSSSAAAAAPTPPPPSSAGDHYLAKCVLRPSVVLQVAYGYFRSRSSRD
IVFGKETCIELAVIGEDGVVESVCEQNVFGTIKDLAVIPQSNKPYSNSFQMGKDLLAVLS
DSGKLSFLSFSNEMHRFSPIQHVQLSSPGNSRDQLGRMLTVDSSGLFLAVSAYHDRFALF
SLSTSSMADIILKRIFYPSEDGGKASSEQAVSGTIWSMCFISKGFNESMDYDPVLAIVLN
RKGSLLNELVLFRWNVKEESICLISEYVEAGALAHSIVEVPHSSGFAFLLRMGDALLMDL
RDPQNPCCLVRTSLDLVPASLVEEQFLEESCRVQDGDDEGLFNVAACALLELRDYDPMFI
DNESDNGKLSSKHVSSWTWEPPEHNHNPRMIICLDDGEFFMFELIYEDDGVKVNVSECLY
KGLPCKEILWVEGVFLATFAEMADGTVFKVGTEKLHWMSSIQNIAPILDFSVVDDQNEKR
DQIFACCGVTPEGSLRIIRSGINVEKLLKTAPVYQGITGTWTVKMKLTDVYHSFLVLSFV
EETRVLSVGLSFKDVTDSVGFQPDVCTLACGLVADGLLVQIHRDAIRLCMPTVDAHADGI
PVSSPFFSSWFPENVSISLGAVGENLIVVSTSNPCFLSILGVKSVSSQCCEIYEIQRVTL
QYEVSCISVPQKYIGKKRPRACAVDNSCSKAAIPSGMERGYTFLIGTHKPSVEVVSFSEE
DGGGVRVLASGRVSLTNTMGTVISGCIPQDVRLVLVDQVYVLSGLRNGMLLRFEWPPFSH
SSGHCKEEMDSVASDLLLIATRRIGITPVFLVPLSDSLDSDIIALSDRAWLLQTARQSLS
YTSISFQPSTHATPVCSPECPQGILFVAENCLHLVEMVHSKRLNAQKFHLGGTPRKVIYH
SESKLLIVMRTDLYDACTSDICCVDPLSGSVLSSYKLKPGETGKSMELVRVGNEQVLVVG
TSLSFGPAILPSGEAESTRGRLIILCLEHTHNSDSGSMTICSKAGSSSQRTSPFRDVVGC
TTEQLSSSSLCSSPDDNSYDGIKIDESETWHLRLACATTWPGMVLAICPYLDHFFLASAG
NAFYVCGFPNDSPERMKRFAVGRTRFMITSLRTYFTRIVVGDCRDGVLFYSYHEDVKKLH
QIYCDPAQRLVGDCFLMDANSVAVSDRKGSIAILSCKDHSDFEYSNPESNLNLNCAYHMG
EIAMAIKKGCNIYKLPADDVLRSYGLSKSIDAADDTIIAGTLLGSIFVFAPISREEYELL
EAVQAKLVVHPLTAPVLGNDHKEFRGRENPSQATKILDGDMLAQFLELTNRQQESVLSTP
QPSSSALKAISKQCSSPPLMLHQVVQLLERVHYALH
NT seq
4071 nt
NT seq
+upstream
nt +downstream
nt
atggcggctccggaggatgaatcttccgctcagtctcaatcttcctctgccgctgcggcg
gctcccactcctcctcctccctcctccgcaggggatcattacctcgctaagtgcgtcctc
cgccccagcgtcgttctccaggttgcttatggctatttccgctctcgctcctcccgcgac
atagttttcggcaaggagacctgcatagagttggcggttatcggtgaagacggggttgtt
gaatcggtgtgtgaacagaatgtatttggaactattaaggatttggctgttatacctcag
agtaataaaccgtactcaaatagttttcagatgggtaaagaccttttggctgttctttct
gattctggaaagctctcatttctctcatttagcaatgaaatgcacaggttctcgccgata
caacatgttcaactttctagtccaggaaattcgagggatcaacttggaagaatgctcact
gtagattctagcggactttttcttgctgtcagtgcatatcatgatcgctttgcgctattt
tccctctcaacatcgtctatggctgatattattcttaagaggatattttatccttctgaa
gacggagggaaggctagctctgaacaagcagtatctggtactatttggagcatgtgtttc
atttctaaaggttttaatgagtccatggattatgatcctgttcttgccatcgttttaaat
aggaaagggtctctcctgaatgagctggttttgtttagatggaatgtcaaagaggaatcc
atatgtttaatatcagagtatgttgaagctggggctctagcacatagtattgtcgaagtt
cctcactcctctggattcgcctttctgttaaggatgggtgatgcgctcttaatggatctt
agagatcctcagaacccttgctgtttggttaggacgtccttagatcttgttcctgcatca
ttagtggaagagcagtttcttgaagagtcgtgtagagtacaagatggagacgatgagggc
ctttttaatgttgccgcatgtgctttgttagagctaagggattatgatcccatgttcatt
gataatgaaagtgacaatggaaagttgagctccaagcatgtctcttcatggacttgggag
ccgccggaacataatcacaatccccggatgattatttgcttagatgatggcgaatttttc
atgtttgagctcatatatgaagatgatggggttaaagttaatgtatcagagtgtttatac
aaaggtctaccgtgcaaggaaatattatgggtggaaggtgtgttcctggccacgttcgcc
gaaatggctgatggaacggttttcaaagtgggaaccgagaagctacattggatgagttcc
attcaaaatatagctccgatcttggatttctcagttgtggatgaccagaacgagaaacga
gaccaaatctttgcttgctgtggcgtaacgcctgaaggctctttaaggattatccgtagt
ggcattaacgtagaaaaacttctgaaaaccgcacctgtttatcaaggaatcactggtact
tggaccgttaaaatgaagcttactgatgtgtaccattcattccttgttctgtcgtttgtt
gaagagacaagggtcttatcagttggattaagttttaaagatgtcaccgattcagttggt
ttccagcctgatgtttgcaccttggcgtgtggactcgttgccgatggtttgttggttcag
attcaccgagatgcaataaggctgtgcatgcccaccgtggatgctcatgctgatggcatt
cctgtttcttcaccgtttttctcctcttggtttccagaaaatgtcagtatcagcttgggg
gcagtcggtgaaaatctgatagttgtgtctacgtctaacccttgtttcctgtctattctc
ggagtcaaatcagtatcatctcagtgctgtgaaatctatgagattcaacgagtaacattg
cagtatgaagtctcctgcatctcagttcctcaaaaatatattggaaaaaagagaccacgc
gcttgtgccgtggataatagttgtagtaaagctgcgattccctctggtatggagcgaggc
tatacgtttctgattggcacacataagccttctgttgaggtcgtctccttctcagaagaa
gatggtggtggtgttcgagtccttgcttctgggagggtatcgctaacaaacacaatggga
actgttatcagtggatgtattcctcaagatgtaagactcgtgttagttgatcaagtttat
gtcctttctgggttaagaaatggaatgctgctacgttttgagtggcctcccttttcacat
tcatccggtcactgtaaagaagagatggacagtgttgcgagtgaccttctgttaattgcc
acccgacgtatcggcatcacacctgtttttctggttccgctcagtgattcactagattca
gacatcatagctcttagtgacagggcatggttgttacaaacagctcggcaaagtctttcc
tacacttccatctcattccaaccttctacccatgcaactcctgtatgctcgcctgaatgc
cctcaaggaattctttttgttgcagagaactgtttacatctggtggagatggtgcacagc
aaacggcttaatgcgcaaaagtttcaccttggaggcactccgcgaaaggttatctaccat
agtgaaagcaaactattgattgtgatgagaactgatttgtatgatgcgtgtacgtctgat
atatgctgtgtggacccgctcagtgggtcagtgttatcatcctacaagctcaaacctgga
gaaactggaaagtcaatggagcttgtacgtgtgggaaatgagcaggttcttgtggttgga
acgagtttgtcttttggtcctgctatactacccagtggtgaagctgaaagtacaagaggc
cgattaatcattctctgcttagaacacactcacaactcggatagtggttcaatgacaatc
tgctcaaaggctggttcatcttcccaacgtacatcgccttttcgtgatgttgtgggatgc
acaacagagcaactatcaagcagtagtctctgcagcagtcctgatgataacagctatgat
ggaatcaaaattgatgaatctgaaacatggcatttgagattggcctgtgcaacaacttgg
cctggaatggtacttgccatctgtccataccttgatcatttcttcctagcgtctgctggc
aatgctttctatgtatgcggctttccgaacgatagtcctgagagaatgaaaaggtttgca
gtgggaaggactcgtttcatgataacatctctgcgcacatacttcacgagaattgttgtt
ggggattgccgtgatggtgttctattctattcttatcatgaggatgtgaagaaacttcac
caaatatattgtgatccggcgcagcggttagttggtgattgctttctaatggatgccaat
tctgttgctgtatctgatcgcaaggggagtatagctatcttgtcttgcaaagatcattca
gactttgaatattcaaatccggagtccaacctgaatctaaactgtgcttatcacatgggt
gagattgccatggctatcaaaaagggttgcaacatttacaaacttccagctgatgatgtg
ctgcgaagttatggtcttagtaaaagtattgacgcagctgatgacactatcatagctggc
acactgttgggaagtatattcgtctttgctcctatttcaagggaggaatatgaactccta
gaagctgtccaagcaaagctcgtggtccatcctctgactgctcctgttcttggtaatgat
cataaggagttcagaggtcgagagaatccgtcccaagcgacaaagattttggacggagac
atgcttgctcagttcttggagcttacaaatagacagcaggagtcagttttatcgacacct
caaccatcgtcaagcgcattaaaagcaatttcaaagcaatgttcttctccgcctctcatg
ctacaccaagttgtacaattgctcgagcgtgtccattacgctctccactag
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integrated database retrieval system
