KEGG   Brassica napus (rape): 106415216
Entry
106415216         CDS       T04128                                 
Name
(RefSeq) katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.2 isoform X1
  KO
K18643  katanin p80 WD40 repeat-containing subunit B1
Organism
bna  Brassica napus (rape)
Brite
KEGG Orthology (KO) [BR:bna00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:bna04812]
    106415216
Cytoskeleton proteins [BR:bna04812]
 Eukaryotic cytoskeleton proteins
  Microtubules
   Tubulin-binding proteins
    Microtubule severing proteins
     106415216
SSDB
Motif
Pfam: Katanin_con80 WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 EIF3I WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EML ANAPC4_WD40 WD40_MABP1-WDR62_2nd Beta-prop_SPT8 Beta-prop_SCAP Beta-prop_TEP1_C WD40_MABP1-WDR62_1st Beta-prop_DCAF4 NBCH_WD40 Beta-prop_EIPR1 Beta-prop_WDR75_1st WDR90_beta-prop_4th Beta-prop_IFT140_1st eIF2A Beta-prop_WDR19_1st Beta-prop_IFT122_1st WD40_RFWD3 Beta-prop_RIG_2nd Beta-prop_Vps41 Beta-prop_HPS5 Beta-prop_IP5PC_F Beta-prop_VPS8 WD_LRWD1 VPS8_N PROPPIN
Other DBs
NCBI-GeneID: 106415216
NCBI-ProteinID: XP_013711312
LinkDB
Position
C1:33760123..33767193
AA seq 1125 aa
MAKRGYKLQEFLAHSANVNCLSIGKKTSRLLITGGDDYKVNLWAIGKPTSLMSLCGHTSA
VDSLAFDSAEVLVLGGASSGLIKLWDLEEAKMVRAFTGHRSSCSAVEFHPFGEFLASGSN
DTNLKIWDIRKKGCIQTYKGHTRDINTIKFSPDGRWVVTGGLDNAVKVWDLTAGKLIHDF
KFHEGSIRSLDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEDTGVRSIKFHPDGRT
LFCGLDDGLKVYSWEPVVCHDSVDMGWSTLGDLCISEGKLMGCSYYQNSVGIWVSDISQI
EPYGIGSVDKKECVEKVLSVLDDQSSERVKNGLRRSSSPDYETKEIKNIYIDSTGGNSTV
ADKSGSLSTSKVNATSTGQLGDKSFIVHGDTGKDSSDSGKESITFSKTKPGMLLRPAHVR
KTPTKQSVAVQSSTPKQSGSDGEKTLDTKTVLDSEGSGRKPFDASDSIIKSITSKFEKAL
FPESPTDEAKSLLLKPPLVQRSPNTKYNEKRWAVSVDSENLDSHQSGLEESRDADLPKEL
ADDRGCNPTEEDASDAIILSKPERVLTPEKAGDEQKGVESPGGSKESDSVKVVRGVKVVS
GRTRSLVERFERRETITPSEEEDKAAIAATVQSTNSVEEEAKSASTPAVSTTPTQVMPVK
LDEATNLTTVEAPVVATRRPRSIPARVMPVVLGRDTNMSTDVPSVTLTGPDRTPAANLTS
DESSVTSTRQSRSSPSPVMPVVLNQTTKMKSDDPPVTSTRPDRSSAANLTSDESPVSSTR
QATSPAPVTPLILNRSRSTNMKPDEPHVIPRRPLRSSSTRIRPVMLNQTTKTHDERPVQS
TRSARTSPARVIPMKLSQADDIPSYEPPVALTRSARNSPVRAIPSKINQANNVTSDASHI
RSRHRFSPTQTLATASVIDQVADMTLDEAHIAQTQPDYDISNQKEEPRISERENEDDVSE
TLMQTHNEVLNTLQSRLTKLQIVRHFWVRNDIKGAIMALKKLSDPSVQADVISILTDKPE
ILTLDLFSQLAPVLTGLLGSRTERPVSVSLEMLLKLVAVFGAVVQSNVSARRSVGVDLHA
EERLQICQSCSAELQKVQKILPLLTRRGGLIARKAQELNLVLQTP
NT seq 3378 nt   +upstreamnt  +downstreamnt
atggcgaagcgtggatataagctgcaggagtttttggcacattctgcaaatgtaaattgc
ctgagcatcggaaaaaagacgtcacggctacttattactggcggtgatgattacaaggtc
aacctttgggccatcggcaagcctacttctttaatgagtttgtgtggacatactagtgca
gtggattcactagcttttgactcggctgaagttttggttcttggtggagcttcttcgggt
ctgatcaagctgtgggatctcgaagaagcaaagatggttcgagcttttactggacataga
tccagttgttctgctgttgagtttcatccatttggtgaatttttggcatccggatcaaac
gacacgaatctgaagatttgggacatcaggaagaaggggtgcatacagacctacaagggg
catactcgtgacatcaacactatcaaatttagtcccgatggtcgttgggtagtgacagga
ggacttgacaatgctgtaaaggtatgggatttgactgctggaaaacttatacatgatttt
aagtttcatgaaggatctatccgttcactggacttccacccacttgagttcctcctagct
actggttcggctgacaggactgtaaagttctgggatttggaaacgtttgaattgattggg
tctacccgaccagaggacactggagttcgttcaatcaaatttcatccagatgggcgaacc
cttttttgtggtttggatgatggcttaaaggtttattcttgggagccagtggtttgtcat
gatagtgttgatatgggatggtcaactcttggtgacttatgcatcagcgaagggaagctc
atgggttgttcatactaccaaaattccgtagggatttgggtctctgatatatcacaaatt
gaaccatatggcattggatctgtggataaaaaagaatgcgtggagaaagtactcagcgtt
ctggacgatcagtcttccgagagagttaagaatggtctgaggcgtagctcatctccagat
tatgagacaaaagagatcaaaaacatatacatagactccacaggtggaaattcaactgtt
gcagataagtcaggatcactaagtacttctaaagtcaatgcaacatctactggacaacta
ggggataagtctttcattgtccatggtgatactgggaaagactcttctgattcaggaaag
gaatctatcactttctcaaaaacgaagccaggcatgctactgagaccagctcatgttagg
aaaacgccaacaaagcagtcagtggctgttcaatctagtactccgaaacaaagcggatcg
gacggtgagaaaacgctggatactaagactgttcttgattcggaagggagtggtagaaaa
ccatttgacgccagtgattcgatcatcaagagtataaccagcaagtttgaaaaggcttta
tttccagaatcaccaactgatgaagcgaaatctttgctgctgaaaccgccactcgtgcag
agatcaccaaatactaagtacaatgagaaaagatgggcggtgtctgttgattctgaaaat
ttagatagtcaccaaagtggtttagaggaatcgagagacgcagacttgccaaaagagctt
gcggatgacagagggtgtaacccgactgaggaggatgccagtgatgcgatcattttaagc
aagccagaacgagttttaacgccagagaaagctggtgatgaacagaaaggcgtcgaatcc
cctggaggtagcaaagaatcagactctgtgaaggttgttagaggagtaaaagttgtttcc
gggaggacacggtcattggttgagaggtttgagagaagagaaacaattactccttcagaa
gaagaagataaagcagccattgcagcaacagttcagagcactaactctgtggaggaagag
gccaaatcagcatctacaccagcagttagcacaacgcctacccaagttatgccagttaaa
cttgatgaggcaactaacttgactacagttgaagctcctgtggtagcaacacgacgacct
aggagtattccagccagagtaatgcctgtggttcttggtcgggacacaaacatgtcaact
gatgtgccttctgtaacattaacaggacctgataggactccggctgctaatttgacatct
gacgagtcttctgtaacatcaacacgacagtctaggtcttctccatccccggttatgcct
gtggtactcaatcagacaacaaaaatgaaatctgatgaccctcctgtaacatcaacacgg
cctgataggagttcggctgctaatttgacatctgatgaatctcctgtatcatcaacacga
caagcaacttctccagccccagttacgcctctgatactcaatcggagtcggtcaactaac
atgaaacctgatgaacctcatgtaataccaagaagaccactgaggagttcttcaacgcgt
ataaggcctgtgatgctcaatcaaacaactaagacgcatgacgagcgtcctgtacaatca
acacgatcagctaggacttcaccagcccgtgtaatacctatgaaactcagtcaagcagat
gatattccatcttatgaacctccagttgcattaacacggtcagctaggaactctcctgtt
cgtgcaattccttctaaaatcaaccaagcaaataatgtgacatctgatgcatcacatata
agatccaggcatcgatttagcccaactcaaacgctggcaacagcttcagtaattgatcaa
gtggctgatatgacactggatgaggcgcatatagcacaaactcaaccagattatgatatc
tcgaaccagaaggaagagcctcggatatctgagagggagaatgaagatgacgtcagtgag
acgttaatgcaaactcataatgaggtcttaaacactcttcaatcaaggttgacaaaatta
cagattgtaagacatttttgggtacgtaacgatattaaaggcgcaatcatggcattgaaa
aagctgtcagatccctcggttcaagcagatgtgatcagtattctaacagacaaaccagag
attcttacgctggatctgttttcacaattagcacctgtcctcacaggcttattggggagc
aggactgaaaggcctgtaagtgtctccttggaaatgctcttgaaattagtagcagtgttc
ggtgcagttgtacaatcaaatgtttcagcaagacgaagtgttggtgttgatcttcatgca
gaagaaagattacagatctgccaaagttgttctgcggaattgcagaaggttcaaaagatc
cttccactactcaccagaagaggaggtctcatagctagaaaggctcaagaactaaactta
gttcttcagacaccataa

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