Brassica napus (rape): 106415324
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Entry
106415324 CDS
T04128
Name
(RefSeq) protein ALTERED SEED GERMINATION 2
KO
K11807
WD and tetratricopeptide repeats protein 1
Organism
bna
Brassica napus (rape)
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
bna04121
]
106415324
Ubiquitin system [BR:
bna04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
106415324
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_TEP1_2nd
EIF3I
WDR55
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_EIPR1
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_RIG_2nd
Beta-prop_WDR35_TULP_N
Beta-prop_HPS5
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_IFT122_1st
Beta-prop_IFT140_1st
WD40_MABP1-WDR62_1st
TPR_2
Motif
Other DBs
NCBI-GeneID:
106415324
NCBI-ProteinID:
XP_013711444
UniProt:
A0A816J221
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Position
C9:60254387..60262592
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AA seq
753 aa
AA seq
DB search
MENLSFHDGNIFNLLHSRSTEPSHDVDQRMQLHSSLVRRLSQEQELEGHQGCVNAISWNS
TGSLLVSGSDDLRVNIWDYSSRKLVHSVETGHTANIFCTKFVPETSDELVVSGAGDAEVR
LFNLAGLRGRADDDNALTPSAMYQCHTRRVKKLAVEPGNPNVVWSASEDGTLRQHDFRES
TSCPPAGSAHQDCRSVLLDLRSGAKRALADPPKQTLSLKSCDISATRPHLLLVGGSDAFA
RLYDRRMLPPLTSCRKRMPPPPCVNYFCPMHLSERGRTNLHLTHVTFSPNGEEVLLSYSG
EHVYLMNVNNGVGTMQYTPGDVANFFSLSNILHDVESPPQVSTTQNGFHRNGSAAMLKKC
TELVELAKSSLEEGTDIFYAIEAANEVLDAHSNDIESALRHECLCTRAALLLKRKWKNDA
HMAARDCQNARRIDASSFKAYYYMSEALQQLGKCKEALDFATAAQQLKPSDADIVAKVES
IKRDLQAAGAEKKEEPEGGTGRVLSLSDILYRSEANSDSSHDMSRSEGDQSDYDEELEVD
IQTSMSDDEGGDPDSNAMRGSLNLRIHRVSDDKPIENSGDNGSSGTASSSQNDRTSYQPE
GAIDMKRRYIGHCNIGTDIKQASFLGQRGEYIACGSDDGRWFIWEKQTGRLMKVLVGDEA
VVNCIQCHPFDSVVATSGIDNTIKMWSPIASVPSIVAGGSAGPATANVVEAMESNQQKLS
RNRENPLSVELLQRFRMQEFAEGNFHPFECTQS
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
atggagaatctaagctttcatgatggtaacatcttcaatctcctccactcgaggtccacg
gagccaagtcatgacgttgatcaaagaatgcaattacattcttccttggttcggagactc
tctcaggaacaggagctcgagggacatcaaggctgtgttaatgctatctcatggaactct
actggatcactgttggtctctggatcagatgatttaagggttaatatttgggattactcc
agtcgaaagcttgtgcattctgtagagacggggcacactgccaacatattctgtaccaag
ttcgtccctgaaacctctgacgagcttgtcgtttctggtgctggagatgctgaagttagg
ctattcaatctagccgggttaagaggtagagcagacgatgataatgctcttacaccgtcg
gcaatgtaccaatgccacacgcggagagtgaaaaagctagctgtcgaaccaggcaacccc
aatgttgtatggagtgctagtgaagatgggactctgcggcagcatgatttccgtgaatct
acatcttgtcctcccgctggatccgctcaccaagattgccgcagtgttcttcttgacctg
cgaagtggagccaaaagagcactagctgatcctcctaagcagactctctccctgaagtcg
tgtgatataagtgccacaagaccacacctacttctcgttggtgggagtgatgcgtttgct
cgtttgtacgatagaaggatgcttcctccgttgacatcatgccggaaaaggatgcctcca
cctccatgtgtcaattatttctgtcccatgcatctttctgaacgtgggcgaacaaatttg
cacctaactcatgtaactttcagtcctaatggtgaagaagttttgctcagttacagcggg
gagcatgtgtacctgatgaatgtaaataatggcgttggaaccatgcaatacacaccagga
gatgtagcgaacttcttttctttgagtaacattctccatgatgtagaatctccacctcag
gtttccaccactcaaaatggctttcacagaaatggcagcgctgcaatgttaaagaagtgc
accgaattggtagaacttgccaaaagttctttagaagagggtacggatattttctatgca
attgaggcagctaacgaagttctagatgcgcattctaatgatattgagtccgcgctaagg
catgaatgcctttgtactcgtgcagcgttgttgctcaagaggaagtggaagaatgatgct
catatggccgcaagagattgccaaaatgctaggagaattgatgcttcatcttttaaagca
tattactacatgtctgaagcattgcagcaattgggaaaatgtaaagaagctctggatttt
gcgactgctgcacaacaattgaaaccatcggatgctgatatagtggcaaaggtggagagc
attaaaagggatcttcaagcagctggagctgaaaaaaaagaggagccagaaggaggaact
ggtagagtactttctttgagcgacatactttatagatcagaggcgaacagtgacagttcg
catgatatgtcgagatccgaaggagaccagtctgattatgatgaggaattagaggttgat
attcaaacttccatgtcagatgatgaaggaggagatccagactcgaatgctatgcgtggt
agcctaaatctaagaattcatagagtaagtgatgataagcccatagaaaattctggtgat
aatggctcctcgggaactgcatcgtcatctcaaaacgatagaacctcttatcagccggaa
ggagccattgatatgaagcgtagatatattggccactgtaacattggaactgatattaag
caagccagttttctcggccagagaggtgaatatattgcgtgtggaagtgatgatggtagg
tggtttatatgggagaagcagacggggaggcttatgaaagtacttgttggcgatgaagca
gttgtgaactgcattcagtgccatccgtttgacagcgttgtagcaacgagtggaatcgat
aacacaataaagatgtggagtccaatcgcatcagtgccatcgattgtagcgggtggatca
gctggacctgcaacagccaatgtagtggaagcaatggagagtaatcaacagaaactaagc
cgcaatcgagagaaccctctgtctgtggagcttctgcagaggtttaggatgcaagagttt
gcagaagggaactttcacccatttgaatgtactcagagctaa
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