Brassica napus (rape): 106415397
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Entry
106415397 CDS
T04128
Name
(RefSeq) polyadenylate-binding protein 4
KO
K13126
polyadenylate-binding protein
Organism
bna
Brassica napus (rape)
Pathway
bna03015
mRNA surveillance pathway
bna03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106415397
09123 Folding, sorting and degradation
03018 RNA degradation
106415397
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106415397
03041 Spliceosome [BR:
bna03041
]
106415397
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
106415397
mRNA cycle factors
Stress granule specific factors
106415397
Spliceosome [BR:
bna03041
]
Complex C
Other components
Complex C specific factors
106415397
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_occluded
RRM_RdRP1_2
RRM_Nup35
Nup35_RRM_2
RBD_DGKtheta
Motif
Other DBs
NCBI-GeneID:
106415397
NCBI-ProteinID:
XP_013711547
UniProt:
A0A078JQH4
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All DBs
Position
C8:complement(42861523..42864805)
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AA seq
645 aa
AA seq
DB search
MAQAPPPSSSPPATDGTTVASDGLNLGSMCSLYIGDLDFSVTDSQLYDYFTKVCQVVSVR
VCRDSATNTSLGYGYVNYSKIDDAEKAMKKLNFTHLNGKMIRVTYSSRDSAARTSGIGNL
FVKNLDKSVDNKTLHDTFSECGNIVSCKVATDHMGQSRGYGFVQFESEDSAKTATEKLNG
RILNDKEIFVGPFLRKEERESASDKTKFTNVYVKNLSETTTDDELKAAFGQYGGISSAVV
MRDGDGRSRCFGFVNFESAEDAARAVEGLNGKKFDDDKEWYVGKAQKKSEREVELSRRYE
QGVRETAGNGFDGLNLYVKNLDETVTDEKLRELFAEFGTIISCKVMRDPNGISKGSGFVA
LSAASEASRVLNEMNGKMVSGKPLYVALAQRKEERRANLQAQFSQMRPAFVPGMSPSMPI
FPGGGAPGIGQPMFYGQGPPLIIPHQGGFGYPPQMVPGMRPGFFGPMIQQGPRPGGRRPG
DGPMHHQPQQPMPFMQSQMMPRGRGYRYPPGRNMPDGLMPGGRVPFPYDSNGVPLGQHLP
AGALASSLASSLAQASPAQQRTLLGESLYPLVDLIEHENAAKVTGMLLEMDQAEVLHLLE
FPEALNAKVSEALDVLRNVNQPTQVSEGKSGTPSDLLASLTIHDH
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atggcccaggctcctcctccttcgtcttctcctccggctacagacgggacaacggtggct
tctgatggactcaatctcggttctatgtgctccctctacatcggagatctggatttcagc
gtcactgattctcagctctacgactatttcaccaaggtctgtcaggtcgtatccgttcgc
gtttgccgtgactcggccaccaatacttctcttggatacggctacgtcaactacagcaaa
atcgatgatgctgaaaaggcaatgaagaagctgaatttcactcatctcaatggcaagatg
atccgtgttacttactcttctcgggactctgctgctcgtacaagtgggattggcaactta
ttcgtcaagaatctggacaagtcggttgacaacaagacgcttcacgataccttctcagag
tgcggaaacatcgtgtcctgcaaggtcgctactgaccacatgggccagtccagaggatac
ggtttcgtgcagttcgagagcgaggactcagctaaaaccgctaccgagaagctcaacggt
agaatcctcaacgacaaagagatcttcgtcggaccgtttctccggaaggaggagcgtgag
tctgcttccgataagaccaagttcaccaatgtctacgtgaagaatctctcggagacgact
actgacgatgagctgaaggctgcttttggacagtacggtggcatctcgagcgctgtggtt
atgagggacggagacgggaggtccaggtgtttcgggtttgtcaacttcgagagtgcggaa
gacgcggctcgcgctgttgaggggcttaacgggaagaagtttgatgatgacaaggagtgg
tatgttggtaaagctcagaagaagtccgagagggaagttgagctgagcagaagatatgag
caaggcgtgagggagacggcggggaacggattcgatggtttgaatttgtatgttaagaac
cttgacgagaccgtcacggatgagaagttgcgtgagctgtttgctgagtttggtactatt
atttcctgcaaggttatgagagaccctaatggaattagcaaaggatcaggatttgttgcc
ttatctgctgccagtgaagcttctagagtgctgaacgagatgaatggtaaaatggttagt
ggcaaaccgttgtatgtggcgcttgcacaaaggaaggaagaaagaagggctaacctgcag
gcacagttttctcagatgagacctgcctttgtccctggtatgagtcctagtatgccaata
ttcccaggtggtggtgctccaggtattggacagcccatgttttacggtcaagggcctcca
ctaatcatccctcaccagggtggattcggatatccgcctcagatggttcctggaatgagg
ccaggcttttttgggccgatgatacagcaaggcccacgaccaggtggaaggcggccaggt
gatgggcccatgcaccatcagcctcagcaaccaatgccttttatgcagtcacagatgatg
ccaagaggacgtgggtaccgttacccacctggtagaaacatgccagacggtctaatgcca
ggaggaagggttccatttccttatgactctaatggagtgcctcttggtcagcatttgccc
gccggtgcattggcttcttcccttgcttcttcccttgctcaagcttcccctgctcagcag
agaactcttctgggtgagagtctatacccattagtggacctgatagagcacgagaacgct
gccaaagtgacgggtatgcttttggagatggatcaggccgaagttttgcatctgctcgag
ttcccggaagctctaaatgctaaagtttcagaggcattggatgtgttgagaaacgtgaat
cagccaacgcaggtgagtgaaggcaagagtggaaccccaagtgatctcttggcttcactt
accattcatgatcactga
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