Brassica napus (rape): 106415437
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Entry
106415437 CDS
T04128
Name
(RefSeq) guanine nucleotide exchange factor subunit RIC1-like isoform X2
KO
K20476
RAB6A-GEF complex partner protein 1
Organism
bna
Brassica napus (rape)
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
bna04131
]
106415437
Membrane trafficking [BR:
bna04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Rab associated proteins
106415437
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIC1
Beta-prop_EML_2
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_RIG_2nd
ANAPC4_WD40
WD40_WDHD1_1st
Beta-prop_WDR19_1st
WDR55
Beta-prop_TEP1_2nd
Beta-prop_IFT140_1st
Beta-prop_VPS8
Beta-prop_HPS5
Motif
Other DBs
NCBI-GeneID:
106415437
NCBI-ProteinID:
XP_013711602
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Position
A9:37460254..37466347
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AA seq
1128 aa
AA seq
DB search
MYMAYGWPQVIPLLPGSCPSSQRIVYLKLAGKLLLVVSPSHLELWGSSQQRVRLGKYIRD
EKSVREEGENLQAVWSPDSKLIAVLTSSFFLHIYKVKFMDKRIKTGERQPSELCFASISL
LLSEQVPFAGEDLSVSNFVRDGKTMLLGLSDGCLYSISWKGEFGGAFTIGSQRSDSNDDR
LLSYPVGNGLVSGVDSAALASDDKISTKSAIAQLELCTLSKLLFVLDSDGTLVVCSVNKK
GLKYTESIKAEKRLAGDAVCASMASEQQILAVGTRKGAVELYDLSQSVSLLRTVSLHDWG
YSADYTGPVNSIAWTPDNSAFAVGWKSRGLAVWSVSGCRLMSTVRQIGLSSASSPKINPN
QDSRYEPLMNGTSAIQWDEYGYRLFATEEASCDRILAFSFGKCCLNRGVSGKTYIRQVMY
GEDRLLMVQAEDTDDLKLLHLKLPVSYITQNWPVQHVAASEDGQYLAIAGLHGLILYDVR
FKKWRVFGDVSQEQQIHCKGLLWLGKIVVICNYIESSETYELLFYPRYHLDQSSLLCRKV
LLGKPMVMDVYQDYVLVSYLPFIIHVYHVKLYGELTPSSKAYLELSTVRELSIMTAKSHP
AAMRFVPDQHPRESDVDNDHLSSDLSDREPSRCLILRGNGELSLLDLVDGRERELTDSVE
LFWVTCGQSEEKTNLVEEVSWLDYGHRGMQVWYPSLGDDPFIQEDFLQLDPELEFDREVY
PLGLLPNVGVVVGVSQRMSFSASAEFPCFEPTPQAQTILHCLLRHLLQRDKNEEALLLAQ
LSAEKPHFSHCLEWLLFTVFEADISRPNANRSQISGPGHLKKLSLLRKACDLIKHFPEYY
DVVVNVARKTDARHWADLFSAAGISTTLFEDCFQRRWYRTAACYILVIAKLEGPAVSQYC
ALRLLQATLDESLYDLAGELVRFLLRSGREIEQAPTEADTLSSPKLLGFLIFGSSHKKSS
LDKSSSFKEQSPHVASVKSILESHASYLMSGKELSKLVAFVKGTQFDIVDFLQRERYGCA
QLENFAAGLELIGQKLQMSELQNRLDAEFLLAQMCSVKFKEWIVVLATLLQRSEVLYDIF
RSDLRLWKAYSMTLQSHLGFAQYHDLLQILEEKLSATAGEGSSRGSIS
NT seq
3387 nt
NT seq
+upstream
nt +downstream
nt
atgtatatggcttatggatggccacaggtgatcccgcttctcccgggatcgtgtccgtct
tctcagagaatcgtctacctcaagctcgccgggaagctgttgctggttgtatctccgtct
cacttggagctttggggctcttctcagcaacgagtgaggttggggaagtacattagagat
gagaagtctgtgcgtgaagaaggggagaatctgcaagctgtgtggagtccagattctaaa
ttgattgctgttcttacgtcatcattctttcttcatatatataaagtaaagtttatggat
aaaagaataaagactggggagagacagccttctgagttgtgttttgcgagcatatctctt
ttgctaagtgagcaggtcccttttgctggggaggacttgtctgtgagcaattttgtgagg
gacgggaaaactatgctgttgggactctctgatggatgtttatatagtatttcctggaaa
ggagagtttggtggagctttcaccattggttctcaacgttctgatagcaacgatgatagg
ctgttgtcttaccccgttggtaatgggctagtttctggagtagattcagcagcacttgca
tctgatgataaaatctcgacaaaatcggctattgctcagctggagctctgcactctttcg
aagttattgtttgtgttagattctgatgggacgctagtggtatgctctgtgaataagaaa
ggtttaaagtatactgagagcattaaagcggagaagaggttggctggtgatgctgtttgt
gcatcaatggcttcagagcaacaaattcttgctgtgggtacaagaaaaggggcggtggaa
ttatatgatctttcacaatcggtttctctcttacgtacagtttctttgcatgactggggt
tattcagcggattatactgggcctgtgaatagcattgcatggacgcctgacaactctgct
tttgcggttgggtggaagtcgagaggacttgcagtttggtctgtttcgggatgtaggttg
atgtcaactgtccgccaaattggactgagctctgcatcttcccctaaaataaacccaaac
caagactctagatatgaacctctgatgaatggtacttcagccatccagtgggatgaatat
ggatatagattatttgctacagaggaggcatcttgcgatagaatccttgcattttctttt
ggaaaatgttgcttaaacagaggagtttcaggaaaaacttatattcgtcaggtaatgtat
ggtgaggatagattactcatggttcaggcagaggacactgatgatcttaagcttttgcat
ctaaaacttccagtttcttatattactcagaattggcctgttcaacacgtggcagctagc
gaggatgggcaatacctggctattgctggtttacatggtctgattttatatgacgttaga
tttaagaaatggagagtatttggagatgtcagtcaagaacaacagattcattgcaagggt
ttgttatggttggggaagattgtcgtaatttgtaactacatcgaatcttctgagacgtat
gaattgcttttctatccaagatatcaccttgaccagagctctttgctttgtcgtaaagtg
ctgcttggcaaaccaatggtgatggatgtttaccaggattatgtacttgtatcttacctt
ccgttcatcattcacgtataccatgtgaagttatatggtgaactgacaccttcaagcaaa
gcatatctcgagctttccacagtaagagaattgtccatcatgactgcaaagagccatcca
gcagcaatgcgatttgttcctgaccagcaccctagagaaagcgacgtggataatgatcat
ttgtcttctgatctgtcagacagggaaccctcaaggtgtcttatactgcggggaaatggg
gagctttcacttcttgatttggttgatggacgagagagggaacttacagactcagttgaa
ctattttgggtgacatgtggtcaatcagaggaaaagactaatctcgtcgaggaagtatct
tggctagattatggacatcgaggaatgcaggtttggtatccttctctaggggacgatcct
tttatacaagaggatttcttgcagttggatccagagttggaatttgatcgtgaggtgtat
ccactgggacttctaccgaacgtgggtgttgttgttggagtttctcaaagaatgtctttc
tcggcaagtgcagagtttccgtgttttgagcctacacctcaagctcagactatactccat
tgcctgctccgccacctccttcagcgggataaaaatgaagaggcgttactcttagcacaa
ttatctgcagagaaacctcacttctcccattgcctggagtggcttctttttacggttttt
gaggcagatatttctcggccaaatgcaaacaggagccagatctcaggacctggacatctt
aaaaaattatcccttttgcggaaagcctgtgatttaataaaacatttcccggagtactat
gatgtggttgtgaatgttgccagaaaaacagatgcccgtcactgggctgatttattttct
gctgctgggatttcaacaacgttgtttgaggactgcttccagcgaagatggtatcggaca
gcagcttgttatatacttgtgattgccaaactagaaggtcctgctgtcagccagtactgc
gcattacgactactgcaggcgacacttgatgagtccctctacgatcttgctggagagctg
gtgaggttcttgctgagatctggaagagaaattgagcaagcaccaacagaagcagataca
ttatcatcgcctaagcttctcgggtttcttatttttggttccagccacaagaagtcatca
ctagataagagctcgtcgttcaaggagcaaagtcctcacgttgcttctgtcaagagcata
ctagagagtcacgccagttacttgatgtcgggtaaagaactttcaaagcttgttgccttc
gtgaaaggcacccagttcgatattgtggactttcttcaaagagaaagatacggctgcgct
cagctggagaatttcgcagccggacttgaactcattgggcagaagctgcaaatgagtgag
ctacagaaccggctagatgcagagtttctattggctcagatgtgttctgtcaagttcaaa
gaatggatagttgttcttgccactcttttacaacgatctgaggttctttatgatatattc
cggtctgatctacggttgtggaaagcatatagcatgacattacagtcacacttgggtttc
gctcagtaccatgacttactccagatcctagaggagaaactctcagcaaccgcaggagaa
ggaagcagtagaggttccatctcttga
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