Brassica napus (rape): 106415647
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Entry
106415647 CDS
T04128
Name
(RefSeq) probable NOT transcription complex subunit VIP2
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
bna
Brassica napus (rape)
Pathway
bna03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106415647
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106415647
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106415647
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
106415647
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
106415647
NCBI-ProteinID:
XP_013711856
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All DBs
Position
C5:complement(2974446..2978084)
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AA seq
591 aa
AA seq
DB search
MSSLLNSSVNGSASSLSDGSGSGRAFASSFSGLSGAASPVFHHSGSVQGLHSIHGSFNVS
NSGLIGLASAGVQQQNGRFASSNLPVGLSQISYGSSHGLTNRGGGLGVSPILGNAGSRIQ
SSMGNMVGGGSMGRTLSSGGGLSIPSLGSRLNNGSGNIGQMMSGVLPQGSPQAFSMLGNS
YPAAGGLSQNHVQAMNGLSSMSLLNEMNSSNDISPFDINNDFPQLTSRPTSAQGQLGTRL
QQGLGLSPIVQQNQEFSIQNEDFPALPGYKGSSADYPMDLHHKEQLHENSILMMQSQQLS
MGRSGGFNLGGAYTSHRTQQQQQQHAQAVSSSGVSLNVSDIFSSSHPSYHSQTGVPPGIG
LRPMNSANSVIGMGYDQPLQQYQHHQNTSSQYRLQQMSAIGQPFRDVGLKPMQVTQSNPD
RFSLLGLLSVIKMSDPDLTSLALGIDLTSLGLNLNSTENLHKTFASPWSNEPSKDDPEFS
VPQCYYAKDSPPLHQGLFAKLLLETLFYVFYSMPRDEAQLYATNELYHRGWFYHKEHKLW
FIRIGEPLVKTNTYERGSYHCFDPISFEIVQKENSVLYYEMLEKRPSLSQH
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagcttacttaattcatcagtaaacggatcggcctcgagtttatctgacggctca
ggttcagggagagcgtttgcttcttctttctctggtttatctggggcagcttctcctgtt
ttccatcattccggttctgttcagggccttcatagtattcatggaagctttaatgtttcc
aactctggtctaattggtcttgcttctgctggagtccaacaacaaaacggaagatttgca
tccagcaatcttccggttgggctctctcagatatcttatggtagttctcatggactcact
aatagaggaggaggattgggagtttctccaattttgggaaatgccggctctcggatacag
agctctatggggaatatggttggtggaggctcaatgggcaggactttgagctctggtgga
ggattatctatcccgagtcttggttctcggctaaacaacggatctggaaatatcggacaa
atgatgagtggtgtccttccacaaggatctccgcaggctttttctatgcttggaaactcc
taccctgcagctgggggactttcccaaaatcatgttcaagcaatgaacggtctaagctcc
atgagcttgctgaatgagatgaactcctccaacgacatttctccattcgatataaataat
gattttcctcagctcacaagccgtcccacttctgctcaaggacaattgggaactcgattg
caacaaggccttggactcagccccatagttcagcaaaaccaagagttcagtattcaaaat
gaagattttcctgcattgcctggttacaaaggtagcagtgctgattatccaatggatttg
catcataaagaacaactccatgagaattctattttaatgatgcaatctcaacagttatct
atgggaaggtctggtgggttcaacttaggtggagcatatacgtcacaccgtactcaacaa
caacaacaacaacatgctcaagctgtgagtagtagtggagtctccttaaatgtgtctgac
atcttctcatcctcgcatccgtcttaccactctcagactggtgtacctccgggtatagga
ttaagacctatgaactctgcaaattctgtcattgggatgggttatgaccagcccctccag
caatatcagcaccatcagaacacgtcgtcccagtatcgcttgcagcagatgtcagctatt
ggccaacctttcagagacgtgggattaaaaccaatgcaagtgacacagtcaaatcctgat
cgttttagcttgctcggtttgcttagtgtgataaagatgagcgaccctgacttgacttct
ctggcacttgggattgatctgacgtcacttggattaaacttaaactcaacagaaaatctt
cataagactttcgcctcaccttggtctaatgaaccttctaaagatgatcctgagttcagt
gttccccaatgttactacgctaaagactctccgcctctacatcaagggctctttgcaaag
ttattgttagaaacattgttctacgtattctatagcatgccgagagatgaagcgcagtta
tacgcaacaaatgaactttaccacagaggttggttctaccacaaagaacacaagttgtgg
ttcattagaatcggagaacctctcgtgaaaacgaatacgtatgaaagaggttcatatcac
tgttttgatccaatctcatttgagatcgttcaaaaggaaaattctgttctctactacgag
atgctggaaaagagaccgtccctatctcaacattga
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