Brassica napus (rape): 106415698
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Entry
106415698 CDS
T04128
Name
(RefSeq) probable rhamnogalacturonate lyase B
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
bna
Brassica napus (rape)
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
106415698
Enzymes [BR:
bna01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
106415698
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Gene cluster
GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
RhgB_N
CarbopepD_reg_2
HATPase_c_4
Motif
Other DBs
NCBI-GeneID:
106415698
NCBI-ProteinID:
XP_048621007
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Position
C8:43253081..43259010
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AA seq
675 aa
AA seq
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MKLGAPRKKSGWVMLQVLLLHLLVQSVHSQNSRNKLNITNPGQSIPGLAVQLRRVSNEKV
VVDNGIIQVTFSSPQGLITGIKYNGIDNVLDDEIDDRGYWDVVWYEPEKALEIDKLEGTK
FEIITQNEEQVEISFTRTWTISKRGSLVPLNVDKRYIIRTGVSGIYMYGILERLEDWPDV
DMDQIRIVFKLNPKKFDFMAISDDRQRSMPSMADRDNAKILAYREAVLLTNPKNPMFKGE
VDDKYMYSMEDKDNNVHGWISSDPPVGFWMITPSDEFRLGGPIKQDLTSHAGPITLSMFT
STHYAGKEMRMDYRNGEPWKKVFGPVLAYLNSVSPKDSTLRLWKDAKRQMAEEVRSWPYD
FVNSEDYPLSHQRGTIEGQFYIKDRYVSRLNIYGKFAFVGLAPCGEAGSWQTESKGYQFW
TKADRKGRFIIENVRAGNYSLYAWGYGFIGDYKYEQNITITPGSQMNVGPIVYEPPRNGP
TLWEIGVPDRTAGEFYIPDPYPTLMNKLYVNPLQDRFRQYGLWDRYADLYPQNDLVYTVG
VSDYKRDWFFAHVTRNAGNNTYDSTTWQIIFNLENVNRVGLYTLRIALASAADSELQVRV
NNPKSDHIFTTGLIGKDNAIARHGIHGLYRLYSINVAGDLLSVGDNTIYLTQSRSVGPFQ
GVMYDYIRLESPFTT
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgaaactcggagctccgagaaagaagtcgggttgggttatgctccaagttcttcttctg
catctccttgttcaaagtgttcattctcagaactcacgaaacaaactaaacatcacaaat
cctggacaaagtataccaggcttagcagttcagctaaggagagttagtaatgagaaggtg
gtagttgataatggtattattcaagttactttctcgagcccacaaggtttgataactgga
atcaaatataatggcatcgataacgtgttggacgacgaaattgacgatcgtgggtattgg
gacgtagtatggtatgaaccggaaaaggcattggaaattgacaaactagaaggaactaaa
ttcgaaatcataactcagaacgaagaacaagttgaaatttcatttacaaggacgtggacg
atctcgaaacgtggctccttggtcccccttaacgtagataaaaggtacattattcgaact
ggtgtctccggaatatacatgtacggtatattagagaggttagaagattggcccgacgtg
gacatggaccagattaggatcgttttcaagctcaaccccaaaaaatttgatttcatggcg
atatctgatgaccggcagagaagcatgccatccatggcggatcgagacaatgctaagata
ttagcttacagagaagctgttctcttgacaaacccgaagaaccctatgtttaaaggagag
gtggacgataagtatatgtactcaatggaagacaaagacaacaacgttcatggttggatc
tcgtcggacccaccggttgggttttggatgataactccaagcgatgaattccgacttggt
gggcccatcaagcaagacctcacctctcacgcgggacccatcaccctgtccatgtttacg
agcactcattacgcggggaaagagatgagaatggattatagaaatggagagccatggaag
aaggtttttggacctgtcttggcttatctcaactctgtctctcccaaagattccactctt
cgtctctggaaagatgctaaacgacagatggctgaagaagttagaagctggccttatgat
tttgtaaattcagaagactatcctctttctcatcagagaggaacgatcgaaggtcaattc
tatatcaaagaccgatacgtgtcaagactaaatatatatgggaaatttgcttttgttggt
ttggcaccatgtggtgaagccggttcatggcaaaccgaatcaaaggggtatcagttttgg
acgaaagctgacagaaaaggaagattcataatagagaatgtgagggcaggcaattatagt
ctctacgcatggggttatggttttatcggtgactataaatatgaacaaaacattaccatc
actccaggtagtcagatgaatgtagggcctatagtgtatgagccacctagaaacggtcca
acgttgtgggaaataggtgtaccggaccgaacagccggagagttctatataccggatcct
tatcctacacttatgaataagctttatgttaacccacttcaagacagatttagacaatat
ggattatgggatcgttacgcagatttataccctcaaaacgatcttgtctacacagtcggt
gttagtgattataaaagagattggttctttgcacatgtaaccagaaatgctggaaataat
acatacgattcaacgacatggcaaataatatttaacctggaaaacgtgaaccgtgtcggt
ctctacacgctcagaatagctctagcctcagctgctgattccgagttacaagttcgggtc
aacaatccgaaatccgatcatattttcacgaccggtttaatcggaaaagacaatgccatt
gcaagacatgggattcatgggttatatagattgtatagtatcaacgttgccggagattta
ctaagtgttggtgataataccatatatttaactcaatcgagaagtgtaggaccgtttcaa
ggtgttatgtatgattatattcgtcttgaaagtccttttacaacttga
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