Brassica napus (rape): 106415831
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Entry
106415831 CDS
T04128
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
bna
Brassica napus (rape)
Pathway
bna03013
Nucleocytoplasmic transport
bna03015
mRNA surveillance pathway
bna03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106415831
09122 Translation
03013 Nucleocytoplasmic transport
106415831
03015 mRNA surveillance pathway
106415831
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106415831
03041 Spliceosome [BR:
bna03041
]
106415831
Enzymes [BR:
bna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106415831
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
106415831
Spliceosome [BR:
bna03041
]
Complex C
Other components
EJC/TREX
106415831
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
106415831
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
106415831
NCBI-ProteinID:
XP_013712085
LinkDB
All DBs
Position
C9:complement(60134173..60137801)
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AA seq
427 aa
AA seq
DB search
MGDARDNEAYEEELLDYEEEDEKVLDSGNKVNGDAVKKGYVGIHSSGFRDFLLKPELLRA
IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALIL
CHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNNKIHKELLKNECPHIVVGTPGRVLGL
ARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVC
KKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVSR
AGELNKLLIECNFPSICIHSGMSQEERLTHYKSFKEGHKRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQARFEVDIKELPEQID
TSTYMPS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgggagacgctagggacaacgaagcgtatgaggaggagcttctggactatgaggaagag
gacgagaaggtcttagattctgggaataaagttaacggcgatgcggtgaagaaaggttac
gtgggaatacacagttctggattcagagacttccttttgaaaccggagcttctcagagct
attgttgactctggatttgagcatccatctgaagtgcaacatgaatgtatccctcaagct
atcttgggcatggatgttatctgccaagcaaaatctggtatggggaagactgccgtcttt
gtgctttcgactctgcaacagatcgagccatctcctggccaggtgtctgcactaatattg
tgtcatacaagggagttagcttaccagatctgcaatgagttcgtgcgtttcagtacgtat
ctgcccgatacaaaggtttcagtgttctacggaggagtcaacaataaaattcacaaagaa
ttgctgaagaatgaatgccctcacattgttgttggaacacctggtcgggtccttggactc
gccagggacaaagacctctctttgaagaatgtgaggcattttattcttgatgaatgtgat
aaaatgctcgagtctctcgacatgcggagggacgtgcaggagattttcaagatgacacct
cacgacaaacaagtcatgatgttctcagcaacgctcagcaaagagatacgcccagtctgc
aagaaatttatgcaagatccaatggaaatatatgttgatgatgaagccaaactgactctt
catgggcttgtccagcactacatcaaactgagcgagatggagaagaaccgcaagttgaat
gatcttctggacgcattagacttcaatcaagttgtcatatttgtgaagagcgttagcaga
gctggggagctgaacaaattgctgattgaatgcaattttccctcaatatgtattcactct
ggcatgtctcaggaagagaggctgactcactacaaaagtttcaaggaagggcacaagagg
atccttgtggcgacagacttggtaggaagaggcattgacattgagcgtgtcaacatagtt
atcaactacgacatgccagattctgctgatacatatctccacagggtcggtagagctggt
aggtttggaacaaagggtcttgcgatcacatttgtggcatcagcttcagattctgaagtt
cttaatcaggtgcaagccaggtttgaggttgatataaaggaacttcctgagcagattgat
acttccacatacatgccctcttaa
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