Brassica napus (rape): 106416227
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Entry
106416227 CDS
T04128
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 12
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
bna
Brassica napus (rape)
Pathway
bna03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106416227
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106416227
03036 Chromosome and associated proteins [BR:
bna03036
]
106416227
Enzymes [BR:
bna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106416227
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
106416227
mRNA degradation factors
5'-3' decay
Decapping complex
106416227
Chromosome and associated proteins [BR:
bna03036
]
Eukaryotic type
Gene silencing
piRNA pathway
106416227
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
106416227
NCBI-ProteinID:
XP_013712536
UniProt:
A0A078IDH5
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All DBs
Position
A9:37370085..37373088
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AA seq
475 aa
AA seq
DB search
MNNNRGRYQPGTGTGRGAYQQQPQAQQHVQRGQPQNHQQQQWSRRAQLPGNATNANEVQT
TSSQPPVASSDPNGQDWKASLRLPPPDTRYQTADVTATKGNEFEDYFLKRDLLKGIYEKG
FEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLERIDPNTNVIQAMILVPTRE
LALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHLLVGTPGRILDLTKKGVCV
LKDCTMLVMDEADKLLSAEFQPSLEELIQFLPENRQFLMYSATFPVTVKAFKDRHLRKPY
VINLMDQLTLMGVTQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITE
LGYSCFYIHAKMVQDHRNRVFHEFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSE
SYLHRVGRSGRFGHLGLAVNLVTYEDRFKMYQTEQELGTEIKPIPSNIDQAIYCQ
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atgaataacaacagaggaagatatcaaccggggactggaacgggacgtggagcgtaccag
cagcaacctcaagctcagcagcacgttcaacgcggtcaacctcagaaccatcagcagcaa
caatggtcaagacgcgctcagcttcctggaaacgccactaacgctaatgaggtccagacg
acgtcgtctcagccgcccgtagctagcagcgatcctaatggccaagattggaaggcatcg
ttgaggctcccacctcctgatactcgttatcaaaccgcggatgtgacagctactaaagga
aacgaattcgaagattactttctgaaaagagatctgcttaagggaatatacgagaagggc
ttcgagaagccatctcctattcaagaagagagcattcccattgctttaaccggtagtgat
attcttgctagagccaagaacggcacagggaagactggtgccttctgcatcccagtccta
gagagaattgatcctaataccaatgttattcaagccatgattctagttccaacgagagag
ctagcccttcagacatcacaggtttgcaaggagctttccaagtacttgaacatccaggtt
atggtcaccactggcggtaccagtctgagagatgatatcatgcggttacatcaacctgta
catctgctagttggaactcctggaaggatcttggatctgaccaaaaagggagtatgtgta
ttgaaagactgtacgatgcttgtgatggatgaggccgacaagcttttatctgcagagttc
caaccttctctagaggaactgatacagtttctgccagaaaatcgtcaatttttgatgtat
tccgctacatttcctgttactgtgaaagcctttaaggatcgacatctccggaagccatat
gttatcaatctcatggatcaacttacgcttatgggtgtcacacaatattatgcttttgtt
gaagagagacagaaggttcactgcctcaacacacttttctctaagctgcaaataaaccaa
tcgataatcttttgcaactctgtcaatcgcgtggaactgttggctaagaaaattacagaa
ctcggttattcgtgcttctacattcatgcgaagatggtacaagaccataggaacagagtg
ttccatgagttccgcaatggtgcttgcagaaatctcgtttgcactgatctgtttactcgt
ggaattgacattcaagctgtgaatgtagtgattaactttgattttcctaggacttctgag
tcgtatctacacagggtgggccgatcaggacgttttggacaccttgggttagctgtgaat
ttggtaacctatgaggaccgttttaaaatgtatcagactgagcaagaacttggaactgaa
atcaaaccaattccttcgaatatcgatcaagcaatctactgccagtaa
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