Brassica napus (rape): 106416640
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Entry
106416640 CDS
T04128
Name
(RefSeq) probable pectate lyase 6
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106416640
Enzymes [BR:
bna01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
106416640
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GFIT
Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
Motif
Other DBs
NCBI-GeneID:
106416640
NCBI-ProteinID:
XP_013713015
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Position
C9:24750907..24752930
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AA seq
459 aa
AA seq
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MAVAYLNFGSHVFAFLSLCLAVVAPSVQAHVAVFDEYWTQRQSDALRQTIESYDPNPFNV
TDHLNYHAALAMETTGAENGTRRELGQVGDGRKTKRRGGRYHSLNAIDKCWRGHRNWHKN
RKKLADCVLGFGRKTTGGKKGPIYVVTDASDDDLMNPKPGTLRYAVTRDRPLWIIFGRSM
IIKLQQELIINSDKTIDGRGANVHITGGAGLTLQFVKNVIIHNIHIKTIIPGNGGMIRDS
EHHFGHRTTSDGDGINIFGSTNVWIDHVSMTNCTDGMIDVIMGSTAITISNCHLTDHNEV
MLFGAREEDVIDKKMQITVAFNHFGKRLVQRMPRARFGLVHVVNNDYTHWEMYAIGGNMN
PTIISQGNRFTAPPKENCKQVTKREYAKYSEWKSWNWQSERDYFLNGAYFVKSGRANAWS
PAPENPIPRHFAIQPQPGTGVRRLTKDAGTLGCRPGKSC
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atggcggttgcttatttgaactttgggagccacgtttttgccttcctctccttgtgtctc
gctgtggtggctccatcggttcaagctcacgtcgcggtcttcgatgaatactggacccaa
cgtcaatccgacgcgttaagacaaactatagaatcttatgacccgaatccttttaatgtc
acggaccatttgaactaccatgccgcattagccatggagacaactggtgcagaaaacgga
acaaggagagagctcggacaagttggagacggtcgaaaaacaaagagacgtggaggaagg
taccattccctcaacgctatcgataaatgttggcgaggacacaggaactggcataaaaac
cggaaaaagttagcggactgcgtcctagggttcggtcggaagacaaccggaggcaagaag
ggaccgatctacgtagtcaccgacgcatccgacgacgacctgatgaaccccaagccagga
accttaagatacgcagtgacacgcgacagaccgctttggatcatatttggtagaagcatg
atcataaaactgcaacaagaactgatcataaacagcgacaagaccatcgatggtcgagga
gcgaatgttcatataacaggaggggcaggtttaacgttacagttcgtgaagaatgtgatc
atacacaacattcacatcaagacgattatacctggaaacggtgggatgattagagactct
gaacatcattttgggcatcgaacaacaagtgatggtgatgggatcaatatttttggatcg
accaatgtttggatcgatcatgtctccatgacgaattgtactgatggaatgatagatgtc
atcatgggatcgaccgcgattactatctccaattgccatctcaccgaccataacgaggtg
atgctgtttggggccagagaagaggatgttattgacaagaaaatgcagataacggtagct
tttaaccattttggcaagagattggttcaaagaatgccaagagccagatttggtttggtc
catgtggtcaacaatgactatactcattgggaaatgtatgcaattggtggaaacatgaat
cctaccattataagtcaaggcaaccgtttcactgctcctcctaaagaaaattgcaagcag
gttacaaagagagagtacgcaaagtattcagagtggaaatcatggaactggcaatcagag
agagattactttttgaacggagcttactttgtaaaatcaggaagggcaaacgcgtggagc
cctgccccggaaaatccaattcctagacattttgcaatccagccacagccgggaacaggg
gtaagaagactaaccaaagatgctggtacgcttggttgcagaccaggcaagtcctgctga
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