Brassica napus (rape): 106417700
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Entry
106417700 CDS
T04128
Name
(RefSeq) phytochrome A
KO
K12120
phytochrome A
Organism
bna
Brassica napus (rape)
Pathway
bna04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
106417700
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GFIT
Motif
Pfam:
PHY
PAS
PAS_2
GAF
HATPase_c
PAS_9
PAS_4
HisKA
PAS_8
Chordopox_RPO7
Motif
Other DBs
NCBI-GeneID:
106417700
NCBI-ProteinID:
XP_013713925
UniProt:
A0A078GC59
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Position
C8:47991398..47996702
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AA seq
1123 aa
AA seq
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MSGSRPTQSSEGSSRRSRHSARIIAQTTVDAKLHADFEESGGSSFDYSTSVRVTTPAVEN
NQPPRSDKVTTTYLHHIQKGKLIQPFGCLLALDDKTFKVIAYSENAPELLTMASHAVPSV
GENSVLGVGTDIRSLFTAPSASALQKALGFGDVSLLNPILVHCRTSAKPFYAIVHRVTGS
IIVDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYD
RVMAYKFHEDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKH
VKVLQDEKLSFDLTLCGSTLRAPHTCHLQYMANMDSIASLVMAVVVNEEEDGEATTTPQK
RKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQTLLC
DMLMRDAPLGIVSQSPNIMDLVKCDGAALLYKEKVWKLGKTPSEFHLQEIAFWLCEHHAD
STGLSTDSLHDAGFPGALALGDSVCGMAAVRISSKDMIFWFRSHTAGEVRWGGAKHDPDD
RDDARRMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDGEATDVNTNIIH
SKLNDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGLVNGWNTKIAELTGLPVDEAI
GKHLLTLVEDSSVDIVQRMLENALEGTEEQNVQFEIKTHLSRTDAGPISLVVNACASKDL
HENVVGVCFVAHDLTAQKTVMDKFTRIEGDYKAIIQNPNPLIPPIFGTDESGWCTEWNPA
MSKLTGLKREEVVEKMLLGEVFGTQKKSCCRLKNQEAFVNLGIVLNNAVVTSQEAEKVPF
GFFTSGGKYVECLLCVSKKLDREGPVTGVFCFLQLASYELQQALHVQRLAERTALKRLKA
LAYIKREIRNPLSGIMFARKMMEGTELGPEQRRILQTSGLCEKQLSKILNDSDLESIIEG
CLDLEMKEFTLNEVLTASTSQVMMNSNGKNVCVTNETKEEVMSETLYGDSIRLQQVLADI
MLMAVNFTPSGRQLTVTASLRKDQLGRSVHLAYLEIRITHTGAGLPEFLLHQMFGSEEDV
SEEGLSLMVSRKLVKLMNGDVQYLREAGKSSFIITAELAAASK
NT seq
3372 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggctctaggccaactcagtcctctgagggctcctcaaggcgatcaagacacagc
gctaggatcattgcacagaccaccgttgacgcaaagctccatgctgacttcgaggagtca
ggaggcagttcctttgattactcaacctcagtgcgtgtaaccaccccagctgtggagaac
aaccagccgccgaggtccgacaaggtgaccacgacatatctccatcacatacaaaaggga
aagctgatccagcccttcggctgtttgctcgccttggatgacaagaccttcaaagtcatc
gcgtacagcgaaaacgcccctgagctcttgactatggctagtcacgcggtccccagcgtc
ggcgagaactctgttctaggcgttgggacggatataaggagcctcttcactgctcctagc
gcctctgcgctgcagaaggctcttggattcggagacgtctctcttctgaatcccattcta
gtccactgcaggacttccgcgaagccgttttacgcgattgtgcatagggtcacagggagc
attatagtcgactttgaaccggtgaagccttacgaagttcccatgacggctgctggtgcg
ttgcaatcttacaaactagctgcgaaagcgatcactaggctgcagtctttgcctagcggc
agcatggagaggctttgcgatacgatggttcaagaggtttttgagctcactggatacgac
agagtgatggcttataagtttcatgaggatgatcacggcgaagttgtctccgaggtgacg
aaacccggtcttgagccttatcttggtctgcattatccagccactgatatccctcaagcg
gctcggtttctttttatgaagaacaaagttcggatgatcgttgactgcaacgcaaaacat
gtgaaggtgcttcaagacgagaagctatcctttgatctcaccttgtgcggctctaccctt
agagcgccgcacacctgccatttgcagtacatggccaatatggattctattgcatctctt
gttatggcggttgtagttaacgaggaagaagatggagaagctactactacgcctcaaaag
agaaagaggctatggggtttggtggtttgtcacaacacaactccgaggtttgtcccgttt
cctctcaggtacgcctgcgagtttctagctcaagtgtttgcgatacacgttaacaaagag
gtggagctggagaaccagatcgtggagaagaacattctccgcacgcagacgctcttatgc
gatatgctgatgcgcgatgctcctctggggattgtctctcagagtcccaatataatggac
cttgtgaaatgcgacggagcagctcttttgtataaagaaaaagtatggaagcttggaaaa
actccaagcgagtttcatctacaagagatagctttttggttgtgtgaacaccacgctgat
tcaaccggtctaagcactgatagcttgcatgacgctgggttcccaggagctttggctctt
ggggattcagtatgcggaatggcggcggtgaggatatcttccaaagacatgattttctgg
ttccgttctcatacagctggtgaagtgagatggggaggtgcgaagcatgatccagatgat
agagatgacgcgaggagaatgcacccgaggtcatcgttcaaggcctttcttgaagtggtt
aagacgaggagtttgccttggaaggactatgagatggatgctatacattcattgcagctt
attctgaggaatgctttcaaggatggtgaagctaccgatgtgaatacgaatattattcac
tcgaagcttaatgatctgaagattgacggtatacaagaactagaagctgtgactagtgag
atggttcgtttgattgagactgctactgtgcctatattggcggttgattctgatgggttg
gttaatggttggaacacgaagattgctgagctgactggtcttcctgttgatgaagcgatt
gggaagcatctcctcacacttgttgaagattcttcggtggatatcgttcagaggatgtta
gagaatgcattagaaggaactgaggagcagaatgttcagtttgagatcaagacacatctg
tcaagaacggatgctggaccaataagtttagttgtaaacgcatgcgcaagcaaagacctc
cacgaaaacgtggttggtgtatgtttcgtagcccatgatctcaccgcacagaagaccgtg
atggacaagttcactcgtatcgaaggtgactacaaggccatcatccaaaacccaaaccct
ctgatcccgcccatattcggaaccgacgagtccgggtggtgcacggagtggaatccagca
atgtcaaagctaaccggcttgaagcgtgaggaggtggtggagaagatgctgttgggagaa
gtctttggaactcaaaagaagtcgtgctgtcgtctcaagaatcaagaagcgtttgtgaac
cttgggattgtgctgaacaatgctgtggtgacaagtcaggaagctgagaaagtgccgttt
ggtttttttacgagtggtgggaagtatgtggagtgtttgctgtgtgtgagtaagaagctt
gacagggaaggtccggtgactggggtgttctgtttcttgcaacttgctagttatgagctg
cagcaagcgcttcacgtgcagcgtctagctgagcgtactgcgctgaagagactaaaggct
ttggcttatataaaaagagagattcggaatccgttgtctgggatcatgtttgcaaggaag
atgatggaggggactgagttaggtcctgagcagagaaggatcttgcaaactagcggtttg
tgtgagaagcaactcagcaagattcttaatgattctgatcttgaaagcatcattgaagga
tgcttggatcttgaaatgaaagagttcaccttaaacgaagtgctgactgcttccacaagt
caagtaatgatgaatagcaacggaaagaacgtttgcgtaactaatgaaacaaaggaagaa
gtaatgtctgaaactctgtatggagatagtattaggcttcaacaagttcttgcagatatc
atgttgatggctgttaactttacaccatccggacgtcagctaactgtcacagcttccttg
aggaaagatcagcttgggagatcagtgcatcttgcttatttagagatcaggataacgcat
accggagctgggttaccagagtttttgctacaccaaatgtttgggagtgaggaagatgtg
tcggaggaagggttaagcttgatggttagcaggaaactggtgaagctgatgaatggagat
gttcagtacttgagagaagctgggaagtctagtttcattatcactgcagaactcgctgca
gcaagcaaatag
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