Brassica napus (rape): 106418243
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Entry
106418243 CDS
T04128
Name
(RefSeq) vacuolar protein sorting-associated protein 35A
KO
K18468
vacuolar protein sorting-associated protein 35
Organism
bna
Brassica napus (rape)
Pathway
bna04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
106418243
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
bna04131
]
106418243
Membrane trafficking [BR:
bna04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Retromer subcomplex
106418243
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps35
Motif
Other DBs
NCBI-GeneID:
106418243
NCBI-ProteinID:
XP_013714359
UniProt:
A0A078G5T0
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Position
C7:complement(6855959..6861863)
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AA seq
788 aa
AA seq
DB search
MIADGAGEDEEKWLAAGAAAFKQNAFYMQRAIDSNNLKDALKYSAQMLSELRTSKLSPHK
YYDLYMRAFDELRKLEIFFMEETRRGCSVIELYELVQHAGNILPRLYLLCTAGSVYIKTK
EAPAKEILKDLVEMCRGIQHPLRGLFLRSYLAQISRDKLPDIGSEYEGDADTVTDAVEFV
LLNFTEMNKLWVRMQHQGPARDKEKREKERSELRDLVGKNLHVLSQLEGVDLDMYRDTVL
PRVLEQIVNCRDEIAQYYLMDCIIQVFPDEYHLQTLDVLLGACPQLQPSVDIMTVLSRLM
ERLSSYAALNTEVLPYFLQVEAFSKLNNAIGKVIEAQEDMPILSAVTLYSSLLKFTLHVH
PDRLDYADQVLGSCIKQLSGKGKIHDTRATKELVTLLSAPLEKYNDVVIALKLTNYPLVL
DYLDSENKRVMATVIIRSIMKNKTIIATAEKVEALLELIKGLINDLDEPQGLEVDEDDFE
EEQNSVARLIHMLYSDDPEEMFKIISVLKNHFLTGGPKRLKFTIPPLVVSALKLIRRLPE
EGDNPFGKEASVSATKIFQFLNQIIEALPSAPSPDLAFRLYLQCAEAANKCDEEPIAYEF
FTQAYILYEEEISDSKAQVTALQLIIGTLQRMHVFGVENRDTLTHKAMGYSAKLLKKPDQ
CRAVYACSHLFWLEDHETIQDGERVLRCLKRALKIANSAQQMTSAARGSTGSVTLFIEIL
NKYLYFYEKGIPQVTVESVESMIQLIKNEESLTSDPSAESFFASTLRFMEFQKQKGGVVG
DRYEQIKV
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
atgatcgcagacggagcaggagaagatgaagagaaatggctcgccgccggcgctgcagct
ttcaagcagaacgcattttacatgcaacgcgctattgactcgaataatctgaaagatgct
ctcaagtattcggctcagatgcttagcgagttgcggacttcgaagctttcacctcacaag
tactatgacctctatatgagagcttttgatgagttgaggaagcttgagattttcttcatg
gaagaaactcggcgtggctgctcagtcattgaactctatgagcttgtccagcatgctggt
aacatattaccacgtttgtatctcctgtgtacagcaggatccgtttacatcaaaaccaag
gaagctcctgccaaggaaattcttaaagatctcgttgagatgtgccgtgggattcagcat
cctctacgtggtctcttcttgagaagttaccttgcgcaaattagtcgagataaattgcct
gatattggttctgaatatgaaggagatgctgatacagtcacggatgcggtggagtttgta
ctactgaattttaccgagatgaataaactctgggtcagaatgcaacaccagggacctgct
cgggataaggagaaacgggagaaagagaggagtgagcttcgtgaccttgttggaaagaac
cttcatgtgctgagccagttggaaggtgtagaccttgatatgtacagagatacagttctt
cctagagtcttagagcagatagtgaactgccgagatgagattgcccaatattacctaatg
gactgtatcattcaagtttttcccgacgagtatcacttgcaaactcttgatgtgcttctt
ggagcttgtccacaacttcagccatcggttgacattatgacagtgctttcacgtttaatg
gagagattgtcaagttatgctgccttaaatactgaagttttgccttatttcctgcaagtg
gaagctttctcaaagttgaataatgcaattggaaaggtgatagaagcacaagaagacatg
ccaattctgagtgcagtaaccctatattcttcgcttctcaagtttactcttcatgttcac
cctgatcggcttgattatgcggaccaagttttgggatcatgtattaaacaactgtctgga
aaaggaaagattcatgacacccgtgcaacaaaggagcttgtcacccttttaagtgctcct
ctagagaagtataacgatgttgttatcgcccttaaactaacaaactatccccttgtactg
gattaccttgatagcgagaacaagagagtaatggctactgttataattcgaagcattatg
aaaaacaagactattattgctacagcagagaaggttgaagcattgcttgaactgatcaaa
ggacttatcaatgacctggatgagccgcaaggtcttgaggttgatgaagatgactttgag
gaggagcaaaattctgttgcgcgtctcattcacatgttatatagtgatgacccggaagag
atgtttaagattatcagtgtcctcaagaaccatttcctgacaggagggccaaagcgctta
aagttcaccattccaccccttgttgtgtctgctctgaagctaatcaggcggttgccagag
gaaggagacaatccttttggaaaagaggcttcggtgtctgctactaaaatcttccaattt
ctaaatcagattattgaagcgctacctagtgctccatcacctgacttggcattccgattg
tacttgcaatgtgctgaggctgcgaataagtgtgatgaagagccaattgcatacgaattt
ttcacccaagcatacatcttatacgaagaagaaatttcggactcaaaggcccaggtgact
gctttacaactgataattggaacgctgcaaaggatgcacgtatttggtgttgagaataga
gacactttaacacataaggccatggggtattctgcgaaacttctgaagaaaccggaccaa
tgtcgagctgtttatgcctgctctcatctgttttggctagaagatcatgagaccatacaa
gatggagaaagggttctgcgttgtctcaaacgagcgcttaaaattgcaaattcggctcaa
caaatgaccagcgcagctcggggtagtacaggatctgttaccctcttcatcgagatatta
aacaagtacctctatttctacgagaaagggattccacaggtcacagttgaatcagtggag
agcatgatccaactgatcaagaacgaagaatcgttgacatctgacccatctgccgaatcg
ttctttgcaagtacgcttcggtttatggagttccaaaagcagaaaggcggtgttgttggt
gacagatacgagcagataaaagtatag
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