Brassica napus (rape): 106418303
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Entry
106418303 CDS
T04128
Name
(RefSeq) protein RDM16 isoform X1
KO
K12843
U4/U6 small nuclear ribonucleoprotein PRP3
Organism
bna
Brassica napus (rape)
Pathway
bna03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106418303
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bna03041
]
106418303
Spliceosome [BR:
bna03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
106418303
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PRP3
Prp3_C
Motif
Other DBs
NCBI-GeneID:
106418303
NCBI-ProteinID:
XP_013714431
UniProt:
A0A816KM95
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Position
C5:19198731..19202311
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AA seq
771 aa
AA seq
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MDKERYRSNRDDRDRDSSADRSPEREAGRRHRDGDSKRRDSDHHRSSRREDREDERDRAR
DRRRSVERSEREDRERSHEGSKDKETRSKRKDREEEKGNKEGKKRSRFSDGSGGGERRSR
FEDESKNDQVSEGSRATNAASDVSTGVTSHSSLASETSLAPSQTLLTKVSSISTTDENKS
IVRSHEVHGKSSTDGRTSGQSSSNLSLDALAKAKKAIQLGKGLADRFKKLSSANQGIKLA
SEGSPHARVPPSTTTPTASAGTSSASALPHAVLPGLGNKVNIEAVKRAQEVAARMGYRQD
PEFPTIINYLLGQTPTETMAVQQKPAKAPVLRVDALGREIDEHGNVISVTKPSNLSTLKV
NINKQKKDAFQILKPQLEVNPEENPHFDPRMGIDKNKILRPKRMSFQFVEEGKWTRDAES
LKLRSQFGEAKARELKVKQAHLAKARDDINPNLIEVSERAPRKEKPKEIIPDVEWWDAAV
LTNGVYGDIADGAITDSDLKTEKLTHYIEHPRPIEPPAEAAPPPPQPLKLTKREQKKLRT
QRRLAKEKEKQEMIRQGLLEPPKAKVKMSNLMKVLGSEATQDPTKLEKEIRTAAAEREQA
HTDRNAARKLTPAEKREKKERKLFDDPTTIETIVSVYKINKLSHPKTRFKVEMNARENRL
TGCSVMTDEMSVVVVEGKSKAIKRYGKLMLRRINWAEAVKKDEKEGEEEDDDEEENGGNN
KCWLVWQGSVAKPSFHRFLVQECLTESAAKKVFTDAGVAHYWDLAVNYTED
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
atggataaggagagatacaggagcaacagggacgatcgcgatcgtgattcgagtgcggat
cgttcgccggaacgcgaagccgggcgccgccatcgcgatggagattcgaagcgtcgcgat
tcagatcaccaccggtcatcgaggcgcgaggatagggaggatgagagagatagagctcgg
gacagaaggagatctgtggagagaagcgagagggaagatagggagaggtctcacgaagga
agtaaagataaggaaacgaggagcaagaggaaagatagagaggaggagaaggggaataag
gaagggaagaagagatctaggttctctgatgggagtggtggtggtgagaggagaagcagg
tttgaggatgagagcaaaaatgatcaagtgagtgagggttctagggctacgaacgcagct
agtgacgtctccactggcgtcacttcacatagttctttagcttcggaaacgtctttagcc
cctagtcaaaccctgctcactaaggtatcttcaatatccacaacggatgaaaataagagt
attgtcaggtctcatgaggttcatggaaaatctagtacagatggaagaacatccgggcaa
agtagttcaaacttgtctcttgatgccttagctaaagctaagaaagctattcagcttgga
aagggattagccgacaggtttaagaaactttcttcggcgaatcaaggtattaagttagct
tcagaaggtagcccacatgctagagtgccaccatcgactaccactcctactgcctctgcg
ggaacatcttctgcttcagcattaccacatgctgtcttacctggccttgggaataaggtc
aacattgaagctgttaagagagctcaggaggtggcagctaggatgggataccgtcaggat
ccagagtttcctaccattatcaattatcttctaggacagacacctacagagacgatggct
gttcaacagaaacctgcgaaggctcctgttctgcgtgtggatgcacttggaagggagata
gatgaacatgggaatgtgattagtgtgactaagccaagcaatcttagtacattaaaggtt
aacatcaacaaacagaagaaagatgcttttcagattcttaaacctcaactggaagtaaat
ccagaagaaaacccccattttgatccgaggatggggattgataaaaacaagattttgagg
cccaagcgtatgagttttcagtttgttgaggaaggtaaatggacaagggatgctgagagt
ttgaagttgaggagtcaatttggtgaagcaaaagcaagagagctgaaggtgaagcaagcg
catctggctaaggccagggatgatataaatccaaatttgatagaggtatcagaacgtgcc
ccgagaaaagagaaacccaaggagataatcccagatgttgagtggtgggatgctgctgtt
ctcacaaatggcgtgtatggtgacatagctgatggtgccattaccgatagcgatctgaag
acagaaaaactcacacattacatagagcatccccgtcccatagagccacctgcagaagca
gcgcctccaccaccccagcctcttaaactgacaaagagggaacagaagaaacttcgaacc
cagaggcgtctggcaaaagaaaaggagaaacaggagatgatcagacaagggttgcttgaa
ccaccaaaagcaaaggtgaaaatgagcaatctgatgaaggttcttgggtctgaagcaacg
caagacccaaccaagctcgagaaggaaatccgcacagcagctgcggaacgtgaacaagct
cacacagacaggaacgcagcacggaagctaacacctgcagagaaacgtgagaagaaagag
aggaagcttttcgatgatccaacaactatcgagacgatagtgtctgtgtacaagatcaac
aagctctctcatcctaaaacgagattcaaggtggagatgaatgctagggagaacagatta
acgggttgtagcgtgatgacagatgaaatgagtgtggttgtagtggagggtaagagcaaa
gccataaagagatacgggaagctgatgctgaggcggataaactgggcagaggcagtgaag
aaggatgagaaggaaggagaggaagaagatgatgacgaagaagagaatggcggaaacaat
aagtgctggttggtttggcaaggaagcgttgcgaaaccgagttttcataggtttctcgta
caagagtgcttaacggaatctgctgccaagaaagttttcacggatgctggtgtcgctcac
tactgggacctcgctgtcaactacaccgaagactaa
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