Brassica napus (rape): 106418336
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Entry
106418336 CDS
T04128
Name
(RefSeq) protein CTR9 homolog
KO
K15176
RNA polymerase-associated protein CTR9
Organism
bna
Brassica napus (rape)
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bna03021
]
106418336
Transcription machinery [BR:
bna03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
PAF1 complex
106418336
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_12
TPR_8
TPR_19
TPR_14
TPR_11
TPR_16
TPR_17
TPR_6
TPR_CcmH_CycH
TPR_7
TPR_9
ARM_TT21_N
ANAPC3
TPR_10
ARM_TT21_C
ARM_TT21_5th
TPR_Slam
ARM_TT21_4th
Fis1_TPR_C
NatA_aux_su
UBA_N4BP1
SPOB_a
Motif
Other DBs
NCBI-GeneID:
106418336
NCBI-ProteinID:
XP_013714475
LinkDB
All DBs
Position
C3:34449046..34455948
Genome browser
AA seq
1088 aa
AA seq
DB search
MASVYIPVQNSEEEVRVVLDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKIDQFR
QILEEGSSSDIDEYYADVKYERIAILNALGAYYCYLGKTETKHKEKEDYFILATQYYNKA
SRINMCEPTTWVGKGQLLLAKGEIDNAYQAFTIGLGTSDDVPALLGQASVEFHRGRFSES
LQLYKRVLQLHPGCPAAVRLGIGLCRYKLGQLDKARQAFDRVLQLDPDNVEALVALGIMD
LQANDSLGMRKGMEKMQQAFEIYPYCASALNYLANHFFFTGQHFLVEQLTETALAVSTHG
PTKSHSFYNLARSYHSKGDYEKAGMYYMAAIKETNNKPQEFVFPYFGLGQVQLKLGELKG
SVSNFEKVLEVYPDNCETLKALGHLYTQLGKTDKALEYMRKATKLDPRDAQAFVGLGELL
ISSDTGAALDAFKMARTLMKKGGQEVPIEVLNDIGALHFEKEEFESALDNFKEALGDGIW
ISFLDEKEKLEETGVSVQGYKDTGIFHRLIENGHSVDVPWNKVTTLFNMARLLEQLHKTE
TATFLYRLILFKYPGYIDAYLRLAASAKAQNNLPLAIELVNEALKVDDKNPNALSLLGEL
ELKNDDWVKAKETLRAANDATDGKDSYAILSLGNWNYFAAMRNEKRNPKLEATHLEKAKE
LYTKVLTQHSSNMYAANGSGIILAEKGQFDIAKDIFTQVQEAASGSVFLQMPDVWVNLAH
VYFAQGNFALAVKMYQNCLRKFFYNTDSQILLYLARTHYEAEHWQECKKTLLRAIHLTPS
NYTFRFDLGAVMQKSSSSTLQKKKRTADEVRSTVTEAENAVRVFTQLSAASDLQVHGFDS
KKIQTHVQYCTHLLEGAKVHREAAEREELQNRQRLEVARQAALAEEARRKAEEHRKYQLE
KRKQEDELRRLKQEEEKIQRIKEQWKSNTHGSKRKDRAEDDDGEGRPSERKRKKGGKRRR
KDKSSRARHYEDDDEEAAIMDDHNEVEDEDANTNYNREKENQEAEEPVDDDDAHDLLAAA
GLEDPDADDDDGVPASVARRRRALSSSDEEGELMESRPNASPQKENSPGRQEESNVEEEE
DANLNDEE
NT seq
3267 nt
NT seq
+upstream
nt +downstream
nt
atggcgagtgtgtacataccggttcagaattcagaagaagaagttagggttgttcttgat
cagctccctcgtgatgcctccgatatcctcgatatcctcaaagccgaacaagctcctctc
gatctctggctcatcatcgcgagagagtacttcaagcaaggaaagattgatcagttccgt
caaatattggaggaaggctcaagttctgatattgatgagtactatgctgatgttaagtac
gagaggatagcaatcttgaacgctctcggtgcctattactgctaccttggcaaaaccgag
actaagcacaaagaaaaagaagattattttatcttggctactcaatactacaacaaagcc
tccaggatcaatatgtgtgaacctaccacttgggttggcaaaggtcagctcttactggct
aagggtgaaatagataatgcatatcaggcatttacgattggattaggcacttctgatgac
gttcctgctcttctgggtcaggcttctgtggaatttcaccgtggacgtttttctgagtca
ttgcaactgtacaagagggtcttgcaactacatcccggctgtcctgctgctgtgagactg
ggaattggtctttgtcgttataagttgggacaactagataaagcacggcaagcgtttgat
cgcgttttgcagctagatcctgataatgttgaagctcttgtggcacttgggatcatggat
ttacaagcaaatgattctttaggaatgaggaaaggaatggagaaaatgcagcaagcgttt
gagatatatccctattgcgcatcagccctgaattatttagccaatcacttttttttcacc
ggccagcactttctcgttgagcagctgactgaaacggcactagctgtctcaactcatggg
ccaacaaagtcacattctttttacaatttagcacggtcatatcatagcaagggggactat
gaaaaggctgggatgtactatatggcagccatcaaagaaactaacaataagccacaagag
tttgtatttccctactttggtttgggtcaagtacaactaaaattgggggagcttaaagga
tcagtatccaactttgagaaagtattagaagtctaccctgacaactgcgagactctgaag
gctctcggacacttatacactcagcttggaaaaactgataaggcccttgagtacatgcgg
aaggccacaaaacttgatccacgtgatgcccaggcatttgttggccttggtgagctgctg
atatcatctgacacaggggctgcacttgacgccttcaaaatggcacggacgctcatgaaa
aagggagggcaagaagtgcctatagaagtcctgaatgacattggtgctttacattttgag
aaagaagaatttgagtctgcgctagacaattttaaggaggctctgggagatggaatatgg
attagcttccttgacgaaaaagaaaaattagaggaaacaggtgtatctgttcaagggtac
aaggatactggaattttccataggctgattgaaaatggtcactctgtcgatgtaccttgg
aataaagtcacaaccttgtttaacatggctagattacttgagcagttacacaaaactgaa
acagcgacatttctgtatcggttgatacttttcaagtatcctggctacatagatgcttat
ttgaggcttgctgcgagtgccaaagctcagaacaatcttcctctagctattgaactggtg
aatgaagctctgaaggtggacgataaaaatccaaatgctttgtctctgcttggtgaattg
gagcttaaaaatgatgactgggttaaggcaaaagaaacccttcgagctgctaatgatgcg
actgatgggaaggattcatacgctattctttctctgggaaactggaactactttgcagca
atgcgcaatgagaaaagaaatccaaaattagaagctacacatctggagaaggccaaggaa
ctttatactaaagtcctgactcaacatagttccaacatgtatgctgccaacggttctggc
attatactagcagagaaaggacaatttgatattgccaaggatatttttactcaggttcaa
gaagctgcaagcggaagtgtgtttcttcagatgcctgatgtatgggtgaatctggctcat
gtgtacttcgctcaagggaattttgccttagccgtgaaaatgtatcaaaactgcttgcgg
aagttcttttacaacacagactctcaaattcttctttacttggcccgtacccactacgag
gctgagcattggcaagagtgcaaaaagacactgttaagggccattcacctgactccttcg
aattacacattcagatttgatttgggtgctgttatgcagaaatcatcatcttccacactt
caaaagaaaaagagaacagctgatgaggtgcgctcaacagtgacagaagcagagaacgct
gttcgcgttttcactcagttgtctgctgcttcagacctacaggttcatgggtttgatagt
aagaaaatacaaacccatgttcagtattgcacacacctgctagaaggagcaaaagttcac
cgtgaagctgctgagcgtgaggagctgcagaatcggcagagactagaagttgctcgtcag
gctgctttggcagaagaagcacgccgtaaagctgaagagcataggaaatatcagttggag
aaaagaaaacaggaagacgagctgagacgactcaagcaagaagaagaaaaaattcaacgc
ataaaggaacaatggaagagcaacacacatggatctaagcgtaaggatagagctgaagat
gatgatggggaaggtaggccgagtgagcggaaaagaaagaaaggtgggaagagaagaagg
aaggacaaaagctcgagggctcgacattatgaggacgatgatgaagaagcagctattatg
gatgaccataatgaagtggaagacgaagacgccaacactaattataatagggaaaaggag
aatcaagaagctgaggagcctgtggatgatgatgatgctcatgatcttcttgctgctgct
gggcttgaagatcctgatgctgatgatgatgatggggtacctgcttcagttgcaagacga
agaagggcactttcatcatcagatgaagaaggtgaattgatggagagtcggccaaatgca
agcccccagaaagagaattctccaggaaggcaagaagagagcaatgtggaagaagaagaa
gatgctaacttgaacgatgaggagtag
DBGET
integrated database retrieval system
