Brassica napus (rape): 106418493
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Entry
106418493 CDS
T04128
Name
(RefSeq) polyadenylate-binding protein 2-like
KO
K13126
polyadenylate-binding protein
Organism
bna
Brassica napus (rape)
Pathway
bna03015
mRNA surveillance pathway
bna03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106418493
09123 Folding, sorting and degradation
03018 RNA degradation
106418493
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106418493
03041 Spliceosome [BR:
bna03041
]
106418493
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
106418493
mRNA cycle factors
Stress granule specific factors
106418493
Spliceosome [BR:
bna03041
]
Complex C
Other components
Complex C specific factors
106418493
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
RRM_5
RRM_occluded
RRM_10
BRAP2
Motif
Other DBs
NCBI-GeneID:
106418493
NCBI-ProteinID:
XP_013714671
LinkDB
All DBs
Position
Unknown
AA seq
587 aa
AA seq
DB search
MTISIKKEKRKKLVRLVSSSKSKKITRVGSFSSLLSMASSSKKSAAEAKSSGKRKKSEDD
LEQANLLVKRKLKDNLETKHMILKKHKVAVKKKTILVGRVPTHAGIADIIDFFKDVGQVV
RVQRIVKPWLKANTRIAFVKFASSNEAEKAAQKLENLQIFGQIIASYRPSRLKYCKDHIV
WNKDYLLGKEDETPSNFVESVLFVSNLSPQTKIFHIIDYFSYVGEVVTVRLIVNPEGRHV
GYGFVEFDSADAAHNALELMNGEYLLDHMVFLDVAKLPPYRLLHQYNLAEKLCYEDYLRR
AITKGRLDETSYEEEEGLDGTPSFVEAAAVRRKTISVGNLPCPTVIRDIIDLYKDVGQVV
HVRLVTDCEGNQNGMGYIEFASAKEAEKAMKEKYLHGQKLYPYPAEEFPNLPRPKYCIDH
NVWYEDQLGRENRLIDEELEEGFGETHDFAEEVALRKKTLFVYNLSPNVTTCQISAYYKN
VGEVCRVRLVVNREGEHVGCGFVEFASAVEAKKALLYESRALNIHIISDVVEMSPYPIRP
KYNLAEKLWRNEEYLLPVSLPIEGDYLEKPEVTKLFCGKRITFSDDD
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atgactatttctattaaaaaagaaaaaagaaagaagctcgtgcgtcttgtttctagctcg
aagtcgaagaagatcactagggttggttccttttcttcgctgctctccatggctagttct
tcgaagaaatcggccgcagaagctaaatcatcgggcaagcgaaaaaagtcggaagatgat
ttggagcaagctaatttattggtgaagcgcaagctgaaagataatttggagaccaaacat
atgattctgaagaaacataaggttgctgtaaaaaagaaaacgatcttggttggccgagtc
cctacccatgctggtatagcagatatcattgatttcttcaaagatgttggccaagttgtt
cgcgttcaacgtattgtgaaaccctggctgaaggcgaatactagaattgcctttgttaag
tttgcttcttctaacgaagcagagaaggctgcccaaaagcttgaaaatttgcagattttt
ggtcagattattgcatcttaccgtccttcacgactcaagtattgcaaagatcacatagtc
tggaacaaagattaccttctaggaaaagaagatgagacaccttccaattttgttgagagt
gttctctttgtttccaatctctctcctcagactaaaatatttcatatcatcgattacttc
agttatgttggagaagtggttactgttcgacttattgtaaatcccgagggtaggcatgtg
ggctatggctttgttgagtttgattctgccgatgcagcacataatgcgctcgaacttatg
aatggtgaatacttgctcgatcacatggtttttcttgatgtggctaagctacctccgtac
cgtcttctacaccagtacaaccttgcagagaagctctgttacgaagactatcttcgacga
gcgatcacaaaaggaagacttgatgaaacttcctatgaagaagaagaaggccttgatgga
actccaagttttgttgaggcagctgctgtaagacgtaagactatatctgtcggcaatctc
ccttgcccaactgtaatacgagatatcatcgatttatacaaagatgttggacaagttgtt
catgttcgacttgttacagactgcgagggcaaccaaaatggcatgggctatattgagttt
gcttctgctaaagaagcagagaaggcgatgaaagagaagtatttgcatggtcaaaaattg
tatccttatccggctgaggaatttccaaaccttccgcgtcccaagtattgcatcgatcac
aatgtttggtacgaagatcaacttggacgagaaaaccgtttgatcgatgaggaattggag
gaaggatttggtgaaactcatgattttgccgaggaagtagcattaagaaaaaagacactc
tttgtttacaatctctctcccaacgtaacaacatgtcagatctctgcttactacaaaaat
gttggagaagtttgccgtgttcgacttgttgtaaaccgcgagggtgagcatgtgggctgt
ggctttgttgagtttgcttctgctgtcgaagcaaagaaggcgctgctgtacgagagtaga
gctctgaatattcatatcatttctgacgtggttgagatgtctccataccctatccgaccc
aagtacaaccttgcagagaagctctggaggaacgaagaataccttctaccagtaagcctt
ccgatagaaggagattatttggagaaaccggaggtgactaaattattctgcggtaagagg
ataaccttctctgacgatgactga
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