Brassica napus (rape): 106418617
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Entry
106418617 CDS
T04128
Name
(RefSeq) polygalacturonase At1g48100 isoform X1
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Module
bna_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106418617
Enzymes [BR:
bna01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
106418617
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Motif
Other DBs
NCBI-GeneID:
106418617
NCBI-ProteinID:
XP_013714812
UniProt:
A0A816J118
A0A078FCU2
LinkDB
All DBs
AA seq
439 aa
AA seq
DB search
MYRLTLKCLALKLLLLISCDARHSVYWRGNRRSIAEGGSSGTFNVLDYGAKGDGTSDDTK
AFEDAWNEACKVAASTLLVPSGSTFLVGPVSFLGKECKENIVFQLDGKIIAPKSSRAWGS
GLLQWIEFKSLIGITIKGKGVIDGQGSVWWNKSPDYDPADDNDMMKDQKGTKMPGAKPTA
LRFYGSNGVMVNGITIQNSPQTHLKFDNCVNIQVSDFTTSSPGDSPNTDGIHLQNSQDAV
IYRSTLACGDDCISIQTGCSNIYIHDVDCGPGHGISIGGLGKENTKACVSNITVRDVTMH
ETTNGVRIKSWQGGSGSVKQVMFSNIQVSEVANPIVIDQYYCDGGGCHNETSAVAVSNIN
YINIKGTYTREPVRFACSDSLPCTGISLSTIELKPATDKASSSEPFCWEAHGELKTETLP
PIQCLKTEKSTSQSSNDAC
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atgtatagactaaccttgaaatgtcttgccctgaaacttctccttttaatctcttgtgac
gctagacatagtgtatactggagaggaaaccgcaggtctatcgctgaagggggaagttcc
ggaacgttcaatgtccttgactatggtgcaaaaggtgacgggacaagtgatgacacgaag
gcttttgaagacgcttggaatgaagcttgtaaagtggcagcatcgacattattagttcca
tccggttctacgttccttgttggacctgtctccttcctgggaaaagagtgtaaagagaac
atcgtgtttcagttagatggaaagatcatagctccaaaaagttcgagagcttggggatca
ggtctcttgcaatggattgaattcaaatcacttataggaatcactataaaaggaaaagga
gtaatagatggacaaggatcggtatggtggaacaagtcccctgactatgatccagcagat
gacaacgacatgatgaaggatcaaaagggcacgaaaatgccaggagctaaaccaacagcg
ttgagattctacgggagtaacggtgtaatggttaatggaataaccatacagaacagccct
cagacccacctcaagtttgataactgtgtaaacattcaagtgtctgacttcacaacttca
tctcctggagattccccaaatacagatgggatccacctgcaaaactctcaagacgccgtt
atttaccgcagcacgctggcttgtggagatgactgtatatcaattcaaacaggatgctca
aatatctacatacacgatgtagactgtgggcctggccatggaattagcattggaggacta
ggaaaggagaacacaaaggcgtgtgtttcaaacatcactgtccgtgatgtcacgatgcat
gaaactacgaatggtgtaagaataaaatcctggcagggagggtcagggtctgtaaaacaa
gttatgttttcaaatatccaagtcagcgaagtagctaatccgatagtaatagatcaatat
tattgcgatggtggaggatgccacaatgaaacttcagcagtcgctgtatcaaacataaac
tacataaacataaaaggtacctacacaagggaacctgtacgctttgcctgcagtgatagc
ttgccatgcacagggatctcactgtcgaccatagagcttaagccggccacagataaagca
agttcaagtgagccattctgctgggaagcacacggtgaattgaaaactgaaactcttcct
ccaattcagtgtttgaaaacagaaaagtctacaagtcagtcttccaatgatgcttgctga
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