Brassica napus (rape): 106419118
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Entry
106419118 CDS
T04128
Name
(RefSeq) probable polygalacturonase At3g15720
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Module
bna_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106419118
Enzymes [BR:
bna01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
106419118
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Motif
Other DBs
NCBI-GeneID:
106419118
NCBI-ProteinID:
XP_013715333
UniProt:
A0A078IMX8
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Position
C7:32359908..32362681
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AA seq
400 aa
AA seq
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MKSSYHPHIMEIIVRVVFVLTLVNFGFLNGQVYDVLKFGAKGDGTTDDSEAFVEAWKAMC
SSGGSNKTLLVPSDNTFLLQPLVFQGPCNSPSVQVQLEGKIVAPLNKAVWSDFKSYEWVS
FNKIIGLTVLGSGTINGRGSSFWEANMPASKRPTQLHFQGCNNLEINGITSFDSPRNHIS
LTDCRQVKITQIKLIAPGDSPNTDGIDISTSTDVEIYDTIVGTGDDCVALNSGSINISIA
RMRCGPGHGISVGSLGKDGEESIVENVQVTNCTFNDTNNGARIKTWPNGKGYARNIVFMD
IMLTETKNPIIIDQQYIDKGRIDVEESSAVAISNVTFTDFHGTSRQDEIIKIDCSEVTCC
KDIVLDRINITTVDGNKPIVECSNAYGNSTNAYDGCLKTQ
NT seq
1203 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcatcgtatcatcctcacataatggaaattatagtacgtgttgtgtttgtgttg
acgttagtcaattttggatttttaaatggccaagtctatgatgtccttaaatttggtgct
aagggagatggtactaccgatgattcagaggcgtttgtagaagcatggaaagctatgtgc
agtagtggtgggagtaataaaaccctccttgttccttcagataatacctttttactacaa
cctctagtgtttcaaggtccttgtaactctccatctgtacaagttcagttggaaggaaag
attgtcgcccctcttaacaaagcagtatggtcagactttaagtcatacgagtgggtcagt
tttaataaaatcatcggtctaacggtccttggttcaggaacaatcaatggacgtggttca
tctttctgggaggccaatatgccagcttctaaacgccctactcaattgcattttcaagga
tgcaataatcttgaaataaatggaataacctcattcgatagcccgagaaaccatatctca
ctcaccgactgcagacaagtgaaaatcacgcaaataaaacttattgcgcctggtgatagt
cctaacaccgatggaattgatatttcaacatcaactgatgtagaaatatatgacaccatc
gttggaactggagatgattgtgtagctttaaacagtggaagtataaatatcagcatcgca
aggatgcgatgtggtcctggacatggaataagtgtgggaagtttaggaaaagatggagaa
gaatctatagttgagaacgtccaagtgaccaactgcactttcaatgacacgaacaatgga
gcgagaattaagacatggccgaatggaaaaggatacgcaaggaatattgttttcatggat
attatgctcactgaaaccaaaaatccaattataatcgatcaacagtatatagacaaggga
cgtatcgacgtagaggaatcatcagctgtggcgattagcaacgtgacattcacggatttt
catggaacgtcccgacaagatgagattataaagatagattgcagcgaagtcacatgttgc
aaagatatcgttctagatagaattaatattactacggtcgacggaaataagccaatagtt
gaatgcagtaacgcgtatggaaattcaaccaatgcttatgatggttgcttgaagactcag
taa
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