Brassica napus (rape): 106419263
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Entry
106419263 CDS
T04128
Name
(RefSeq) putative pectate lyase 2
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106419263
Enzymes [BR:
bna01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
106419263
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
106419263
NCBI-ProteinID:
XP_022549482
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Position
A10:17380141..17381589
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AA seq
349 aa
AA seq
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MDKCWRPNPHWRKVRNQLARCSVGFAGKMTGNIGKGVTQYKVTDPSDNPLNPKPGTLRYA
ATLIKGKKWITFKRNMKINLHKPLLISSFTTLDGRGVSVHISGPACLIVYKATDVIIHGL
KIHDCKAHPPSSVMGPDSKIMELGQVDGDAIRLVTAKKVWIDHNTLYDCEDGLLDVTRGS
TDVTVSNNWFRNQDKVMLLGHDDGYVRDKDMRVTVVFNHFGPNCNQRMPRVRHGYAHVAN
NYYQGWTQYAIGGSMSPRVKSESNYFVAPESGRKEITWKKHSQGDKMQWKFYSVNDYMEN
GACFGLQKGIGKARPNYGPSQRFTVADAKTVKKLTSSAGALHCTRNSVC
NT seq
1050 nt
NT seq
+upstream
nt +downstream
nt
atggacaaatgttggagaccaaacccacattggcgtaaagtccgtaatcagctggcacgg
tgttctgtcggattcgccggtaaaatgacgggaaacatcggtaaaggagtaacacaatac
aaagtaaccgacccttctgataatcctctaaaccccaaaccaggaaccctaagatatgca
gcaactctcatcaaaggcaaaaaatggatcacgttcaaaaggaacatgaagatcaacctc
cacaaaccgctactaatcagcagcttcaccacactcgatggccgcggtgttagcgttcac
atctccggtcccgcttgtctcatagtctacaaagccaccgatgtgatcatccatggactc
aaaatccatgactgcaaagctcacccaccgagctcggtgatgggaccagactcaaagatc
atggaacttggacaagtggacggagatgcaatcaggctagtcacggctaagaaagtgtgg
atcgaccacaacacgttatatgactgcgaagacgggctattagacgtcacgagagggagt
actgacgtcacggtgtcgaacaattggtttaggaaccaggacaaggtcatgcttcttgga
catgatgatggatatgtgagagacaaagatatgagagtcactgttgtgtttaaccacttt
ggtcctaactgcaaccagagaatgccacgagtgagacatggatatgctcatgtggcgaat
aactattatcaaggatggactcaatacgctattggcggaagcatgagccctcgcgtgaag
agcgaatcaaactacttcgtcgcaccagaatccggacgcaaagagataacttggaagaaa
catagccaaggtgataaaatgcaatggaagttctactcggtgaatgattatatggagaac
ggagcttgtttcggcctacagaaaggtattggaaaagcccggcccaattacggcccatct
caaaggttcacagtagcggacgctaagaccgttaaaaaactcacttcttcagctggagcg
ttgcactgcaccagaaactccgtctgctag
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