Brassica napus (rape): 106419343
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Entry
106419343 CDS
T04128
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
bna
Brassica napus (rape)
Pathway
bna03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106419343
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106419343
03012 Translation factors [BR:
bna03012
]
106419343
Enzymes [BR:
bna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
106419343
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
106419343
Translation factors [BR:
bna03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
106419343
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
T2SSE
ATPase
nSTAND3
AAA_19
AAA_16
PhoH
Myosin_head
Motif
Other DBs
NCBI-GeneID:
106419343
NCBI-ProteinID:
XP_013715563
LinkDB
All DBs
Position
A10:complement(18625118..18630619)
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AA seq
1157 aa
AA seq
DB search
MRFTKRISFFLWQATKLPTRSLPRNPSLCRSYHIVGAPISSGDVVKGLSYGQICRRFIGY
TAEQFSDDEYECEFEEHKASSSVANVDEWKWKLGILLANDSEREIVSRDKRDRRDYEQIS
NLAKRMGLYSEIYGKVVVASKVPLPNYRPDLDDKRPQREVVLPLSLQRRVEGLLQEHLDR
QQLNSGKANESEADSQPPKQTEELPDESSDAFLDGSVMEKVLQRRSMRMRNMQRAWQESP
EGRTMLEFRKSLPSFKDKERLLQAIARNQVIVVSGETGCGKTTQLPQYILESEIESGRGA
FCNIICTQPRRISAMAVAERVSAERGEPLGETVGFKVRLEGMRGKNTQLLFCTSGILLRR
LLSDRNLNGITHVFVDEIHERGMNEDFLIIVLKELLPRRPDLRLVLMSATLNAELFSNYF
GGAPTIHIPGFTHPVKAHFLEDVLEMTGYKLTSFNQVDDYGQEKTWKTQKQLMPRKRKNQ
ITSLVEEALSKSTFESYSSRTRDSLSSWMPDCVGFNLIEAVLCHICRKERPGAVLVFLTG
WDDISSLRDQIKAHPLLGDPNRVLLLMCHGSMATAEQRLIFERAPPNIRKIVLATNMAEA
SITINDVVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRLLPGECYHLYP
KCVYEAFSEYQLPELLRTPLNSLCLQIKSLQVESIAGFLSAALQAPEPLTVQNAIGFLKM
IGALDEKENLTDLGKLLSILPVDPKLGKMLIMGAIFHCFDPILTIVSGLSVRDPFLLPQE
KKDLALSAKLRFSAKDYSDHMALVRAFEGWKNAEREGSAYEYCWRNFLSAQTLQAIHSLR
KQFNYILKEAGLVHDDSALNNKLSHNQSLVRAVICSGLFPGIASVVHRETSMSFKTMDDG
QVSLYANSVNSRFPTIPYPWLVFGEKVKVNAVLIRDSTGVPDSSLILFGGALSTGVQVGH
LKMLDGYIDFFMDPNLADSYVKLKEELNKLLQKKLEDPSVDIHKEGKYLMLAVQELVAGD
QCEGRFVFGRDTKRATSQPQLAGENNKLSKDGTNPKSLLQTLLMRAGHSPPKYKTKHLKT
NEFRALVEFKGMQFVGKPQRNKTLAEKDAAVEALAWLTHTSDNSTDQYSGDADSPPDVTD
NMLKLLGGKRRRRSKGK
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgcgtttcaccaaacgaataagcttcttcctgtggcaggccaccaagctccccactcgc
tctctaccgagaaacccatctttatgcaggtcttatcatatcgttggtgctccgatctct
agtggtgatgttgtcaaaggtttgtcctacggccagatatgtcgtcgtttcatcgggtac
actgcggaacagttctctgatgatgagtacgagtgtgaattcgaggaacataaggcttca
tcttctgtggccaatgttgatgagtggaaatggaagttagggattctgttggctaatgat
agcgagcgagagattgtttctagagacaaaagagaccgaagggattatgagcagatctca
aatcttgccaagagaatgggactctacagtgagatctatggaaaagtggttgttgcaagc
aaggttcctcttcccaactacaggccagatttggatgataagcgaccacaacgggaggtg
gtacttcctctgagtttgcagagaagggtagagggactactccaggaacaccttgataga
cagcagctaaactcaggaaaggctaatgaaagtgaagctgattctcagcctcctaagcag
actgaagagcttcctgatgaaagctctgatgcgtttctcgatggttctgttatggagaag
gtgcttcagaggaggagtatgcggatgcgcaatatgcagagagcctggcaggaatcacct
gaggggcgtacaatgctggaattcagaaaatctttgccttcattcaaggacaaggaaaga
cttcttcaagctattgctcggaaccaggtaatagtggtatctggggagactgggtgtggt
aagacaactcaactgccacagtacattttggaatcggagatagagtctggtcgaggagcg
ttctgcaacatcatttgtacacaacctcggaggatatctgccatggcagttgcagaaaga
gtgtcagctgagagaggagaacctcttggtgaaacggttgggtttaaagttcgtctagaa
ggaatgagaggaaagaatactcaacttctgttctgtacgagtggtattctactcagacga
ctgctcagtgatcgcaatttgaatggcataacacatgttttcgttgatgagattcacgag
aggggaatgaacgaagatttcttgataatagtgttaaaggagcttcttccacggcgtcca
gatttgagattggttctcatgagtgccactttgaatgctgaacttttttctaactatttt
ggaggagcgcctacaattcacattccaggcttcacacatccagtgaaggcacattttctg
gaggatgtactcgaaatgacggggtataagttgacctctttcaaccaagtagatgattac
ggccaagaaaagacttggaaaacgcaaaagcagttgatgccacgcaaaaggaaaaaccag
atcacttctcttgttgaggaagctcttagcaagtcaacttttgaaagttatagctctagg
actcgtgattcactctcgtcttggatgcctgattgcgtaggatttaatcttattgaggcc
gttctctgtcacatatgccgcaaagaacgtccgggagctgtactagtgtttttgacagga
tgggatgatattagctccctgagggaccaaatcaaagcacatcctctcctcggtgatccc
aatagggtcttgctgttgatgtgccacggttcaatggcaactgctgaacagagactcatt
ttcgagagagcacctcctaatattcgcaaaattgtacttgctacaaacatggcagaagct
agtattacgataaacgatgtagtttttgtggttgactgcggaaaggcaaaagagacgacc
tatgatgctttgaacaatacaccttgtttgctaccctcatggatatctcaagcttctgct
cgacagcgaagaggtagagctggtcgtctgcttccgggagaatgctatcacttgtacccc
aaatgcgtgtatgaagctttttcggagtatcaacttcctgaacttctgagaactcctttg
aactctctctgcctgcaaattaaaagtcttcaggttgaaagcattgcagggttcttgtca
gctgcacttcaggctccagagcctttgaccgttcaaaatgctattggatttctgaaaatg
atcggagcactggatgagaaggaaaatctgacggatcttggaaaactcttgtcgattctc
ccagttgatcccaagctagggaaaatgctcataatgggtgccatcttccactgctttgat
ccgatcctgaccattgtatcaggcctcagtgtcagagatcctttccttctacctcaagag
aaaaaggacttagctttatcagccaagttgagattctcagcgaaagactacagcgaccat
atggcactagttcgtgccttcgaagggtggaaaaacgctgaaagagaaggatcggcttac
gagtactgctggaggaactttctgtcagctcagacgcttcaggcgatacattctctgagg
aagcagttcaactatatcctgaaagaagctggtttagtacacgatgattcagctctcaac
aacaagctaagtcacaatcagtctctggtccgcgctgtcatctgctctggcttattcccc
gggatagcatctgttgtgcatagagagacttccatgtcgttcaagacaatggatgatggc
caagtatcactatatgcgaactctgttaattcgaggttcccgacgattccatacccttgg
ctagtctttggagagaaagtgaaggtcaatgcagtgctcataagagactccaccggtgtc
cctgattccagtttgatcctttttggtggtgcactgagcaccggagtacaggtgggacat
ctaaaaatgcttgacgggtacattgacttcttcatggatccaaatttggcagactcctac
gtgaagctgaaggaagaactcaacaagcttcttcagaagaagcttgaagatccaagcgtg
gacattcacaaagaaggcaagtacctgatgcttgcagttcaagagctcgtagctggagac
caatgcgaagggagattcgtattcggccgtgacacaaagagggcaacaagccaaccgcaa
ttagcaggagagaacaacaaactctccaaagacggtacaaacccaaagagtctccttcag
acgcttttaatgagagctggacactcacctccaaagtacaagaccaaacatctgaagacg
aacgagtttagagcgcttgtggagttcaaagggatgcagttcgttgggaagcctcagagg
aacaaaacgctcgctgagaaagatgcagctgttgaggccttggcttggttgacccatacc
tctgataacagtactgaccagtacagtggagacgcggattctccacctgatgttactgat
aacatgcttaaactccttggtggaaaacggcgcaggcggtccaaaggcaagtag
DBGET
integrated database retrieval system
