Brassica napus (rape): 106420065
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Entry
106420065 CDS
T04128
Name
(RefSeq) LOW QUALITY PROTEIN: ribosome biogenesis protein BMS1 homolog
KO
K14569
ribosome biogenesis protein BMS1
Organism
bna
Brassica napus (rape)
Pathway
bna03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
106420065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
bna03009
]
106420065
Ribosome biogenesis [BR:
bna03009
]
Eukaryotic type
90S particles
GTPase
106420065
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RIBIOP_C
AARP2CN
Tsr1_G-like
GTP_EFTU
AAA
AAA_16
AAA_28
AAA_22
nSTAND3
RNA_helicase
AAA_5
AAA_19
MMR_HSR1
NACHT
AAA_11
Motif
Other DBs
NCBI-GeneID:
106420065
NCBI-ProteinID:
XP_022563695
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Position
A9:43708424..43714733
Genome browser
AA seq
1136 aa
AA seq
DB search
MAADELMPTHKSHRAPKSGRTMKKKSETDKKKRGVSDNKKQNPKAFSFTSAAKAKILKLH
AVEKEQVRRIHLPTIDRNYGDPPPFVVVVQGPPGVGKSLVIKSLVKHFTHQNVPEVRGPI
TIVQGKKNRIQFVECPNDINGMVDCAKVADLAILLIDGSYGFEMETFEFLNIMQVHGFPK
VMGVLTHLDKFNDVKKLRKTKKRLTHRFWTEIYKGAKLFYLSGLIHGKYSKLEVDKLSCF
ISLSLTKFHPLKWRTSHPYVLADRMEDVTPPEKLQMDKKCDRNVTLYGYLRGCNLKKGMK
VHIAGVGDYSLAGVTALPDPCPLPSAAKKKGLRDREKLFYAPMSGIGDLLYDKDAVYINI
NDHLVQYSKTDDKNGDSTNKGKGRDVGEDLVKSLQNTKYSVDEKLGKTFINLFGKKTIST
SSERKLEEESSESGDEAEDCVMDVESSDGKTKQKNEIHGGRLRRKAIFKDEVGDSDAMGS
DQDDVEGEEDVEFDGDESEDEEDDSASDSQDLDEDDVQEAEDKVLGNISKWKEPLKEKGR
EKKPNLMQIVYGGPGPSATTPLINETHAISDDDEESDAEDFFKLKGEQSKNLGGAINVGY
VNADDCSRFVNYGNLKIWKEKEDCEIIRNRFTTGDWSEAALRNQNSVPGDEGGDFEDLEA
ENVESGTNQNEDSEVVERRHQKLALRAKFDANNPIYSEAKELGYVDKMKEELETRKQMNM
LELNDLDEDTRIEVEGFRTGTYLRLEIHNVPCEMVEFFDPCHPVLIGGIGYGEDNAGYMQ
ARLKKHRWHKKVLKTRDPIIVSIGWRRYQTVPVYAIEDRNDRHRMLKYTPEHMHCLATFW
GPLVPPNTGFVAFQNLSSNQAGFRITATSVVLEYNHQARIAKKIKLVGHPCKIKKKTAFI
KDMFTSDLEIARFEGSSVRTVNGIRGQVKKAGKNMLDNNAQEGIARCTFEDQIKMSDIVF
LKAWPTVEVPQFYNPLTTALQPREKTWTGMRTFWELRRQHNIPIPVNKDSLYKPIERKIK
KFNPLVISNKLQEELPFASKPKNKPGRKRPSLDVRRAVVMEPGERKALAIVQQLKLMNKV
KMIKRKAKEQEKRKAYEAEKAKKEVISKKRNREERRERYRTEDNKQKNKKMRRNQD
NT seq
3411 nt
NT seq
+upstream
nt +downstream
nt
atggccgccgatgagttgatgccgactcacaagtcgcacagggctcccaaatcaggtcgt
accatgaagaagaaatccgaaaccgacaagaagaaacgtggcgtctccgataacaagaag
caaaaccctaaagcgtttagctttacatcggctgctaaggcgaagattctgaagcttcac
gctgtggagaaggagcaagtacggcgaattcaccttccgactattgatcgtaattacggc
gatcctcctcctttcgtcgtcgttgttcaaggtcccccaggggtcggaaagtctcttgtg
attaagtcccttgtgaagcactttacacaccagaatgtaccggaagttcgaggacctatt
accattgtacaaggtaagaagaatcggatacagtttgtggaatgtcctaatgatatcaat
gggatggtggattgtgccaaggttgctgatctagctattcttctcatagacgggagttat
ggttttgagatggaaacctttgagttcctcaatataatgcaagtgcatggatttcccaaa
gttatgggagtcctcactcacctggataagttcaacgacgtaaagaagctaaggaaaaca
aaaaaacgtctcacgcatcgtttttggaccgaaatatacaaaggagctaaattgttttat
ttatctggtctcattcatgggaagtattcaaaacttgaagttgacaagctttcctgcttt
atatctttatctttaaccaagtttcatccattgaagtggcgaacgtcacatccttatgtg
ttggctgatcgtatggaagatgttacaccgcccgagaaacttcagatggataagaaatgc
gatagaaatgtcacgttgtatggttacctacgtggttgtaacttaaaaaaagggatgaag
gttcatattgctggagttggtgattatagtttagccggggtgactgccttacctgatcct
tgtcctttaccctcagctgccaagaagaaggggctgcgggacagagaaaaacttttctac
gctcctatgtccgggattggagatcttttgtatgacaaagatgctgtttacatcaacata
aatgatcaccttgttcagtactctaaaacagatgataaaaatggagattctactaataaa
ggaaagggaagggatgtaggtgaagatttggtgaagtcgttgcagaacacaaaatattct
gttgatgagaagttagggaagacgttcatcaatttatttggtaaaaagactatttccacc
agctcagaaagaaaacttgaggaagagtcatcagagtctggtgatgaagctgaagattgt
gtaatggatgtagagagcagcgatggtaaaacaaagcagaaaaatgagatccatggtggt
cggttgaggaggaaagctatcttcaaagatgaagttggcgatagtgatgcaatgggctca
gaccaagatgatgttgagggagaagaagatgttgaatttgacggtgatgaatctgaagac
gaagaagatgactctgcgtctgactcgcaggacttagatgaagatgatgtccaggaagca
gaagataaggtccttggtaacatatcaaaatggaaagaacccttaaaggagaagggcaga
gagaagaaacccaacttgatgcaaattgtttatggtggaccgggaccatcagctactact
cccttgataaatgaaacccatgcaattagtgatgatgatgaagaaagtgatgctgaagat
ttctttaagctaaaaggagaacaaagcaagaacttaggtggtgcaattaatgtgggatat
gtcaacgcagatgactgttcaagatttgtaaattatggaaacctgaaaatttggaaagag
aaagaagactgtgagatcatccgtaatcgattcaccactggtgattggtcagaagctgcc
ctgagaaatcaaaactcagtccctggcgatgaaggtggtgattttgaggatctagaagca
gagaacgtggagtctggtacaaatcaaaatgaagatagtgaagtagttgagcgtaggcat
caaaagctggctctccgagcgaagtttgatgcgaacaatcccatttatagtgaagccaag
gaactcggatacgttgataaaatgaaggaggagcttgaaactagaaaacaaatgaacatg
ttagagctcaatgaccttgatgaggatactcgaattgaggtagaaggtttccggactgga
acatacttgcgtctagagattcacaatgttccttgtgagatggtcgagttctttgatccg
tgtcatccagttcttatcggaggtatcggttacggcgaggataatgcaggatatatgcag
gcacggttgaagaaacataggtggcacaagaaagtactgaagacgagagatcccattatt
gtgtctattggatggagacgctatcagactgttcctgtatacgccattgaggatcgcaat
gataggcatcgaatgctcaagtatactccggaacacatgcactgccttgctacgttctgg
ggtcctcttgtcccgcccaacactggctttgtcgctttccaaaacctgtcgagtaatcag
gcagggtttaggataacagcgacttctgtagtactcgagtataatcaccaagcccgtatc
gcaaagaaaatcaagctggttggtcacccatgcaagatcaagaaaaaaactgccttcatc
aaagacatgttcacttctgaccttgaaatagctcgattcgaaggttcctctgtccggaca
gttaatggcattagaggacaagttaaaaaggctggaaaaaacatgctcgataacaatgca
caggaagggatcgcgaggtgtacatttgaagatcaaataaaaatgagcgacatagtcttc
ttaaaggcttggccgacggtggaagttccacagttttacaatcctctaactacagcgttg
cagcctcgggagaagacctggacagggatgagaacgttttgggagcttcgtaggcagcat
aatattcctattccggtgaataaggattcactctacaagccaattgaaaggaagataaag
aagttcaatccattggtgatttcaaataaactacaagaagagttaccgtttgcttccaaa
cccaaaaataaaccagggcgaaagagaccgtcactagatgttagaagagctgttgtaatg
gagccgggagaaagaaaggctcttgctatagtccagcagttgaagctgatgaataaagtc
aagatgattaagagaaaagcaaaggagcaggagaagaggaaagcgtatgaggcagagaaa
gctaagaaggaggtaatctctaagaaacgtaacagagaggagagacgtgagaggtatcgt
actgaagataataaacagaagaataagaagatgagacgaaaccaagattaa
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