Brassica napus (rape): 106420229 Help Entry 106420229         CDS       T04128                                  Name (RefSeq) DNA ligase 1-like   KO K10747   DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] Organism bna  Brassica napus (rape) Pathway bna03030   DNA replication bna03410   Base excision repair bna03420   Nucleotide excision repair bna03430   Mismatch repair Brite KEGG Orthology (KO) [BR:bna00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     106420229    03410 Base excision repair     106420229    03420 Nucleotide excision repair     106420229    03430 Mismatch repair     106420229  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:bna03032]     106420229    03400 DNA repair and recombination proteins [BR:bna03400]     106420229 Enzymes [BR:bna01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      106420229     6.5.1.6  DNA ligase (ATP or NAD+)      106420229     6.5.1.7  DNA ligase (ATP, ADP or GTP)      106420229 DNA replication proteins [BR:bna03032]  Eukaryotic type   DNA Replication Elongation Factors    Other elongation factors     106420229  Prokaryotic type    Elongation factors (archaeal)     Other elongation factors      106420229 DNA repair and recombination proteins [BR:bna03400]  Eukaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     Long Patch-BER factors      106420229    NER (nucleotide excision repair)     Other NER factors      106420229    MMR (mismatch excision repair)     Other MMR factors      106420229 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C Motif Other DBs NCBI-GeneID:  106420229 NCBI-ProteinID:  XP_013716539 LinkDB All DBs Position A9:43389327..43393516 Genome browser AA seq 803 aa AA seqDB search MLAIRSSNHFRCISSLCTKTRFSSVLVSLNRQVSPFPSSSRLHHRAMSSSRPSAFDALMS NARASAKKKTTPQASNSSPSPNKRKISKTQDADSPKAEAFSDSPKPRSDSPSIAEDLKKG AKTQDADLTKVEAFSDSAKPRSSIAKKSRTLSQTDKVDELKSRIVLLKRKPGEFDPERVA CWEKGERVPFLFVALAFDLVSAESGRIVITDILCNMLRTVIATTPDDLVATVYLAANEIA PAHEGVELGIGEGSIIKAISEAFGRTESQVKKLNTELGDLGLVAKGSRSSQTMMFKPEPL TVVKVFNTFRQIAKESGKDSTEKKKDRMKALLVAATDCEPLYLTRLLQAKLRLGFSNQTV LAALGQAAVYNEEHSKPPPKTKSPLEEAAKIVKQVFTVLPVYDIIVPALLTGGVWNLPKT CNFTLGVPIGPMLAKPTKGVGEILNKFQDTVFTCEYKYDGERAQVHCMEDGTFEIYSRNA ERNTGKYPDVALALSRLKKPSVKSFILDCEVVAFDREKKKILPFQILSTRARKNVNVNDI KVGVCIFAFDMLYLNGQQLIQENLDIRREKLYGSFEEDPGYFQFATALTSSDIDEIQKFL DASVDIGCEGLIIKTMNSDATYEPAKRSNNWLKLKKDYMDSIGDSVDLVPIAAFHGRGKR TGVFGAFLLACYDADKEEFQSICKIGTGFSEAVLEERSTSLRSRVIPTPKQYYRVGDSLN PDVWFEPTEVWEVKAADLTISPVHRAANGIVDPDKGISLRFPRLLRVREDKKPEEATSSE QIADMYQAQKHNHPSNEGKGEDD NT seq 2412 nt NT seq  +upstreamnt  +downstreamnt atgttagcgattcgatcatcgaatcacttccgatgcatttcttctctctgcactaaaact cgattctcctccgtattagtctctctcaatcgccaagtttccccctttccctcctcctcg cgcctccaccacagagcaatgtcttcttctcgcccctctgcattcgacgctctcatgtcc aacgctcgcgcttccgccaagaagaaaacgactccccaagcttccaattcatctccctcc ccgaacaaaagaaaaatctcgaaaacccaagacgccgattcgccaaaggcggaagctttt tccgattcccccaaacccagatcagattcgccgtcaattgcggaagatttgaagaaggga gcgaaaacccaagacgccgatttgacaaaggtggaggctttttccgattcggctaaaccc agatcgtcaattgcgaaaaagtctaggactttgagtcagacggataaagtcgacgaattg aagagtaggattgtgttgctgaagaggaagcctggcgaattcgatccggagagagtggcg tgttgggagaaaggggagagagttccgtttctgtttgtggcattggcgtttgatttggta tcagctgagagtggcaggattgtgattactgatattttgtgtaacatgttgaggactgtt attgccaccactcctgatgatttggtcgctactgtttatcttgcggccaacgagattgct cctgctcatgaaggggtggagttggggattggtgaaggttctattattaaggccatctct gaagcttttggtagaactgagtcccaggttaagaagctgaatacggaactgggagacttg gggcttgtagcaaaaggaagccgttcgtcacagactatgatgttcaagccagaaccattg actgttgtcaaggttttcaatacttttcgacaaattgctaaggaaagtgggaaagatagt acagagaagaagaaggatcggatgaaggcacttctcgtggcagctacagactgtgaacct ctttacttaactcgtctacttcaggcaaagttgcggttaggcttctcaaatcagacggtc ttagctgccttgggacaagcagctgtttataatgaagagcactcaaagccacccccaaaa accaagtctcctttagaagaggctgcaaagatcgttaagcaagtattcactgtacttcct gtgtatgacattatagttcctgctcttctaactggcggtgtgtggaatcttcctaaaact tgtaacttcacacttggtgttcctattggaccaatgcttgcaaaaccaacaaaaggtgta ggcgagatacttaacaagttccaggacacagttttcacatgcgaatacaaatatgatgga gaacgtgcacaggtacattgtatggaggatggtacattcgagatatatagtcgtaatgct gaaaggaacactgggaagtaccctgatgttgctcttgcgttatcaaggttaaagaagcct tctgtgaaatcttttatcctggactgtgaggttgttgctttcgatagagagaaaaagaag attcttccgtttcagattctgagcactcgagcgcgtaagaatgtgaacgtcaatgatatc aaagttggcgtgtgcatctttgcttttgacatgttgtatctaaatggacagcaacttatc caggagaatcttgatattcgccgagagaagctatacggatcatttgaggaagatcctgga tatttccagtttgcaactgctctaacatccagcgatatcgatgaaatacaaaagtttctt gacgcttctgttgacattgggtgtgaagggttaatcattaaaacaatgaattcagatgcg acatatgagcctgcaaagcgatcgaataattggttaaaactgaagaaagactatatggac agcattggggattctgtggatcttgtaccaattgctgctttccatggacgtggcaaacgc acaggtgtctttggtgcattcttactagcttgctatgatgctgataaggaagagttccag agcatttgtaaaataggtactggattttctgaagctgtgcttgaagaacggtctacgagt cttcggtccagagtgattcctactcctaaacaatactaccgagttggagacagtctcaat ccagatgtttggtttgagcccactgaggtctgggaagtgaaggcagctgacttgacaatt agccctgtgcatcgtgcagccaatggaattgtggatcctgataagggaatttctctacgt tttcctcgtttactccgtgtacgggaagacaagaagccagaggaagcaacatcatctgaa cagattgctgatatgtaccaagctcaaaaacacaaccatccaagcaatgaaggcaaaggt gaagatgattga

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