Brassica napus (rape): 106420305
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Entry
106420305 CDS
T04128
Name
(RefSeq) probable rhamnogalacturonate lyase B
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
bna
Brassica napus (rape)
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
106420305
Enzymes [BR:
bna01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
106420305
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
RhgB_N
Motif
Other DBs
NCBI-GeneID:
106420305
NCBI-ProteinID:
XP_013716620
LinkDB
All DBs
AA seq
677 aa
AA seq
DB search
MKNGAIVNKMARVMTQVFVLIFLLQGVHSRTSRNKSNIAKPGQNLASPPVTLKKIGLNQV
VVDNGIIQVTFSNPSGLITGIKYNGFNNVLNDEIEDRGYWDVVWYEPEKNPQTDFLKGEK
IDIINQTSEHVEISFSRTWTMARRGSIAPLNVDKRYIIRRGVSGVYMYAVLERLKGWPQV
EMDQTRIVFKLDTTKFDFMAISDNRQKVMPSDADRNINNGIAAPLAYKEAVRLMNPQNHT
LKGQVDDKYMYSIESKDNKVHGWISSDQRVGFWMITPSDEFRACGPVKQDLTSHVGPTVL
SMFTSVHYVGKEMNTAYASSEPWKKMFGPVFVYLNSPSSSDLLWTDAKRQMAAEVQSWPY
DFVKSVDYPLHHQRGTVEGQLFVTDSYKSKSKLYGEFAFVGLALPGQAGSWQTENKGYQF
WTRADKMGRFAIANVRPGSYSLYAWVVGFIGDYKYERDIIITPGKEINVGPIVYEPPRNG
PTLWEIGVPDRTAAEFNIPDPDPTLLTKLYLSNANPSQDRFRQYGLWNRYSVLYPRKDLV
FTAGVSDYKKDWFYAHVNRYSGKEKYQATTWKIVFNLKTMIKTGNYTLRMALAAATNADL
FVRVNEANSNPIFTSGLIGRDNAIARHGIHGLYRLYSIDVQRKLLRVGDNTFFLTQNRNT
SLFTGVMYDYLRLEGPY
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaacggagctattgtaaataagatggctcgagtcatgactcaggttttcgttctg
atatttcttcttcaaggtgttcattcccgaacgtcacgaaacaaatcgaatatcgctaaa
ccgggacaaaacctcgcatctcccccggttacgcttaagaaaattggccttaaccaagtt
gtcgttgataatggtatcatccaagtcaccttctcgaatccatcaggcttaataactgga
atcaagtataatggttttaacaatgtgttgaacgatgaaatcgaggatcgcgggtattgg
gatgtagtatggtatgaaccagaaaaaaacccgcaaacagattttttgaaaggagaaaaa
atcgatattataaatcaaacaagtgagcatgtcgaaatttcattttcaagaacatggact
atggctcgacgtggctcgatagccccattaaacgttgataaaagatatattattcgacgc
ggtgtatctggagtgtatatgtacgctgtgttagagaggttaaaaggctggccgcaagtg
gagatggaccaaactagaattgtcttcaagcttgacacaacaaaattcgattttatggct
atatcagataatcggcagaaagttatgccttctgatgcagatcgaaatatcaacaatggc
attgccgctccattggcttacaaagaagcggttcggttgatgaatccacaaaatcatacg
cttaaagggcaggttgacgataagtatatgtactcgatagaaagcaaggacaacaaagta
catggttggatctcttctgaccaacgtgtcggcttctggatgattactcctagcgatgag
ttccgtgcttgtgggcccgtcaaacaagatctcacttctcatgttggacccactgtactt
tctatgtttacaagtgtacattacgtgggaaaagaaatgaatacagcttatgcaagcagt
gagccgtggaagaaaatgttcggtcctgtttttgtttatctcaattctccctcctctagt
gatctcctttggacggatgctaaacgacagatggctgccgaggttcaaagctggccttat
gacttcgtgaagtcagttgattaccctcttcaccaccaaagaggaacagtcgagggtcaa
ctatttgtcacggacagttacaaaagcaagtcgaagttatacggggagtttgcttttgtg
ggtttagcactacctggtcaagctggttcatggcaaaccgaaaacaagggatatcaattt
tggacacgagcagacaaaatggggaggttcgcaatagcaaatgtgagaccaggaagttat
agcctctacgcatgggttgtcggatttattggagactataaatacgagcgcgacattatc
atcacaccaggcaaggagataaacgtaggaccaatagtgtacgagccgccaagaaatggt
ccgacgctgtgggaaatcggggtaccggatcggaccgcagcagaattcaatattccagat
ccggatccaacccttctgaccaaactctatcttagtaacgcaaatccttctcaagacaga
tttagacaatatggtctatggaatcgttacagtgttttgtatcctcgaaaagatcttgtt
tttactgctggagtaagtgactataaaaaagattggttctatgcacatgtcaacagatat
tctggaaaagagaaataccaagcaacgacatggaaaatagtgttcaatttaaaaacaatg
attaaaacaggaaattacacacttcgaatggctttggctgcagccacgaatgcggattta
tttgttcgggttaacgaagctaattccaatcctattttcacgagcgggttaataggtcgg
gataacgcgatcgctaggcatggaattcatggtctatacagattgtacagtatcgatgtt
caaagaaagttgcttagggttggtgataatacattttttcttactcaaaatcggaatact
agtttgtttacaggtgttatgtacgactatcttcgtttggaaggtccatattaa
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