Brassica napus (rape): 106421516
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Entry
106421516 CDS
T04128
Name
(RefSeq) polyadenylate-binding protein, cytoplasmic and nuclear isoform X2
KO
K13126
polyadenylate-binding protein
Organism
bna
Brassica napus (rape)
Pathway
bna03015
mRNA surveillance pathway
bna03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106421516
09123 Folding, sorting and degradation
03018 RNA degradation
106421516
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106421516
03041 Spliceosome [BR:
bna03041
]
106421516
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
106421516
mRNA cycle factors
Stress granule specific factors
106421516
Spliceosome [BR:
bna03041
]
Complex C
Other components
Complex C specific factors
106421516
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
RRM_5
RRM_Nup35
Motif
Other DBs
NCBI-GeneID:
106421516
NCBI-ProteinID:
XP_022564328
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Position
A2:11035350..11039546
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AA seq
572 aa
AA seq
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MASCSQKANLLGKRKPEDGFGTELVLKKHKEKFEEKETEARVELLSDEANSVTVETEPIL
KGIREEKETAIGFSDEIKGRVELLENEANLISVEGLDEGPEEAAELKKTLFVAHLPPQTK
IRDIIRFFNDVGQVVRVLLQATHKGKCVGEGFVEFASANQAKKALEKKKNEYLHKRKIFL
DVAHKGALCLPPKYCIDHKVWYQEDYLQQESLRIQENPKFSEEATVLFIANLSPQTTKIL
HIINFLEDVGDVVSVRLIVNHEGKHVGYGFVEFASANQAKKALENKNGEYLHDHKIFLMK
RRDETPNFSEAVATVRNKTICITHFSGQTKISDIINFFKDVGQVVHVRLIVNPKIKHVRL
GFVEFASANEAEKALEKNGEYLYDRDIFLDFVEEATYTILSRHCVDHKVWYEDYLQRESL
LIEEHAVAETPDFVEDVNSMKTTVFFATVSMKKENCSMSNIINIFKRVGEVVRVRLIVDH
RGESLGCGFVEFASAEEAKKAVQEKSGCAIYVKVAEKAPYLFRPKCNLADLAEKLWYEDK
LRREGFGLPSKSELRKEEAVFCGKKITFSDKD
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atggccagttgtagccagaaagctaatttattgggtaagcgaaagccggaagatggtttt
ggaaccgaactggttctgaagaaacataaagaaaaatttgaggagaaggagaccgaagca
agggttgagttgttgtctgatgaggctaattcggtgacagtggagaccgaacctattctg
aagggaattagggaggagaaggagacagcgataggattttctgatgagatcaaaggaagg
gtcgagttgttggagaatgaggctaatttaatctcagtggaaggacttgatgaaggtcct
gaggaagctgccgaacttaaaaagacgctctttgttgctcatctccctccccaaactaaa
ataagagatatcatccgtttcttcaatgatgttggacaagttgttcgtgttctacttcaa
gctacccacaagggaaagtgtgtgggcgaaggctttgttgaatttgcttctgctaaccaa
gcaaagaaggcactggaaaagaagaagaacgaatatttgcacaaacgcaagattttcctg
gatgtggctcataagggagctctatgccttccacccaagtattgcatagatcacaaggtt
tggtaccaagaagactatcttcagcaggaaagccttaggatacaagaaaatcccaagttt
tcggaggaagctaccgttctctttattgccaatctctctccgcaaacaactaaaatatta
catatcatcaatttcttggaagatgttggagatgttgtcagtgttcgacttattgtaaac
cacgagggtaagcatgtgggttatggctttgttgagtttgcttctgctaaccaagctaag
aaggcactggaaaataagaatggtgaatatttgcacgatcataagatctttttgatgaaa
agacgtgatgaaactcccaatttttctgaggcagttgccactgtaagaaataagacgatc
tgtattacccatttctctggacaaactaaaatatcagatatcatcaattttttcaaagat
gttggccaagttgttcatgttcgacttattgtaaaccccaagatcaagcatgtaaggctt
ggctttgttgagtttgcttctgctaacgaagcagagaaggcgctcgaaaagaacggcgaa
tatttgtacgatagagatatttttcttgattttgtcgaggaagctacatacactatacta
tccaggcattgcgtagatcacaaggtttggtatgaagactacctacaacgagaaagcctt
ctgatagaagaacatgcagtagcagaaactcccgattttgttgaggatgttaactcgatg
aaaacgacggtcttttttgccacagtctctatgaaaaaagaaaattgtagcatgtcaaat
atcatcaatatcttcaaacgtgttggagaagttgttcgtgttcgacttatagtagaccac
aggggtgagtctctgggctgtggctttgttgagtttgcttctgctgaggaagcaaaaaag
gctgtgcaagagaagagtggttgtgctatttatgtcaaggtggccgagaaagctccatac
cttttccgacccaagtgcaaccttgcagaccttgcggagaagctttggtatgaagacaag
cttcgacgagaaggctttggtttgccgagcaaatcagagctgaggaaagaggaggcagtc
ttctgcggtaagaagattaccttctctgacaaagactga
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