KEGG   Brassica napus (rape): 106422589
Entry
106422589         CDS       T04128                                 
Name
(RefSeq) histone deacetylase 6
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
bna  Brassica napus (rape)
Pathway
bna03082  ATP-dependent chromatin remodeling
bna03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:bna00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    106422589
   03083 Polycomb repressive complex
    106422589
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:bna03036]
    106422589
Enzymes [BR:bna01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     106422589
Chromosome and associated proteins [BR:bna03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     106422589
   HDAC complexes
    Sin3A-HDAC complex
     106422589
    BRAF-HDAC complex
     106422589
    REST complex
     106422589
    SHIP complex
     106422589
    MiDAC complex
     106422589
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     106422589
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    106422589
  Chromatin remodeling factors
   NuRD complex
    106422589
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 106422589
NCBI-ProteinID: XP_013718823
UniProt: A0A816IIZ1
LinkDB
Position
C3:40461749..40464136
AA seq 470 aa
METDESGVSLASGPDGRKRRVSYFYEPTIGNYYYGQGHPMKPHRIRMAHSLIVHYNLHRR
LEISRPYLADAADIGRFHSPEYVDFLRSVSPESVGDSSARNLRRFNVGEDCPVFDGLFEF
CRASAGGSIGAAVKLNRQDADIAINWGGGLHHAKKSEASGFCYVNDIVLGILELLKMFRR
VLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIRDVGAEKGKYYALNVPLN
DGMDDESFRSLFRPLIQKVMEVYRPEAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLR
SYNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYFEYFGPDYTLHVEPGP
MENLNTPKDMERIRNTLLEQLSGLIHAPSVPFQHTPPVNRVLDEPEEDLEKRPKPRIWSG
TANYESDSDDDEKPLGGFSGINGPTMDRDSTGEDEMEDDSAEPEVDPPSS
NT seq 1413 nt   +upstreamnt  +downstreamnt
atggagacagacgagagcggcgtctctttagcgtcagggcccgacggtcgtaagcgacga
gtcagctacttctacgagccaacgatcggtaactactactacggtcaaggccaccccatg
aagcctcaccggatccgtatggctcatagtctaatcgtccactacaacctccaccgccgc
ctcgagatcagccgcccttacctcgccgacgctgccgacatcggtcgcttccactctccc
gagtacgtcgatttcctccgctccgtttcgccggagtccgtcggcgattcgtccgcgcgt
aacctaaggcgattcaatgtcggcgaggattgtcccgtcttcgacggtcttttcgagttt
tgccgcgcttccgccggaggttcgatcggcgccgccgttaaattgaaccggcaggacgcg
gatatcgccatcaattggggcggtgggcttcaccacgctaagaagagcgaggcgtctggg
ttttgctacgtaaacgacatcgttttggggattctcgagttgcttaagatgtttaggcgg
gttctctacattgatatcgatgttcaccatggagatggagtagaggaagcgttttacacc
actgatagagttatgaccgtttcttttcacaagtttggggacttcttccctggaactggt
cacatcagagacgttggcgctgagaaagggaagtactatgctctcaatgtcccgttgaac
gatggtatggacgatgagagtttccgcagcttgtttagacctcttatccagaaggttatg
gaggtttatcggccagaagcagttgttcttcagtgcggggctgactccttgagcggtgat
cggctgggttgcttcaacttgtcagtcaagggccatgctgattgcctccggttcttgaga
tcttataatgttcctctcatggtcttgggtggtggagggtatactattcggaatgttgct
cgttgctggtgttatgagactgcagttgcggttggagtagagccggacaacaagctaccg
tacaatgagtactttgagtatttcggtccagactatacgcttcatgtcgagccaggccca
atggagaatttgaacacaccaaaagatatggagaggataaggaacacattgctagaacaa
ctttctggactaatacacgcacctagtgtgccgtttcagcacacacctccagttaatcga
gtcttagatgagccggaagaagacttggagaagagaccaaagcctcgaatttggagtgga
actgcgaattatgaatcagacagtgacgatgatgagaaacctcttggtggtttctcaggt
attaatggcccaactatggacagggactctacaggggaagatgaaatggaagatgatagc
gcagagccggaggtggatccaccatcgtcttga

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