Brassica napus (rape): 106422905
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Entry
106422905 CDS
T04128
Name
(RefSeq) probable cyclic nucleotide-gated ion channel 20, chloroplastic
KO
K05391
cyclic nucleotide gated channel, plant
Organism
bna
Brassica napus (rape)
Pathway
bna04626
Plant-pathogen interaction
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09150 Organismal Systems
09159 Environmental adaptation
04626 Plant-pathogen interaction
106422905
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
bna04040
]
106422905
Ion channels [BR:
bna04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
106422905
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GFIT
Motif
Pfam:
Ion_trans
DUF6525
cNMP_binding
TARP
Motif
Other DBs
NCBI-GeneID:
106422905
NCBI-ProteinID:
XP_048614419
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Position
C5:complement(46421876..46425401)
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AA seq
750 aa
AA seq
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MEKDDVPMLPVSDSSSLSRTRPFTSRSRSVSLANTSSTIDGFDSSTVVLGYTGPLRTRRR
PPLVQMSGPLSSTRSSEPLFLPPPPTSTRDVSSSQPERYPSFAALEHKNSEEEFVLKHAH
LLRSGQLGMCNDPYCTTCPSYYNRKAAQIPTSRVSAIFDSTFHDAKGWARRFATSINRHL
PGIMNPHSKFVQSWTKFFAFSCLLAIFIDPLFFFLILVKQNNNCIEIDWPMAHTFVAVRS
VTDVLFSVNILLQFRLAYVAPESTVVGAGQLVDHPRKIASHYFRGKFLLDLFIVMPLPQI
LILWIIPAHLAISGANYAKNLLRAAVLFQYIPKLYRLLPLLAGQTPTGFIFESAWANFFI
NLLTFMLAGHVVGSCWYLFGLQRVNQCLRDACGNSDRPCRELIDCHGALSAAWKDNAGAS
ACFQEDGFPYGIYLKAVNLTNHNSLFTRYSYSLFWGFQQISTLAGNLIPSYFLGEVFFTM
GIIGLGLLLFALLIGNMQNFLQSLGRRNLEMTLRRRDVEQWMRHRRLPGDIRKRVREAER
FNWAATRGVNEELLFKNMPDDLQREIRRHLFIFLKKVRIFSVMDESILDAIRERLKQRTY
IRSSMVLHRGGLVEKMVFIVRGEIESVGEDGYVLPLSEGDVCGEELLTWCLERSSVNPDG
TRIRMPSKGLLSNRNVRCVTNVEAFSLSVADLEDVTSLFSRFLRSNRVQGAIRYESPYWR
LRAAMQIQVAWRYRRRRLQRLYTDQSSYSL
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
atggagaaggatgatgttcccatgcttccagtttcagactcatcatcgttatctcgtact
aggcctttcacttccaggtcacgtagcgtttctctcgcaaacacttcttccaccattgat
gggttcgacagctcgactgttgttttaggctacacaggtcctcttcgaactcgtagaagg
cctcctttagttcagatgagtggccctctctcatctactcgcagttctgagcctctcttt
cttcctcctcctcctacttccactcgcgatgtctcctcctctcagcctgagaggtaccct
tcttttgctgctctcgaacacaaaaactcagaggaagagttcgtattaaaacacgcacat
ctcttgagatctggacagttgggtatgtgtaatgatccttactgtaccacttgtccttct
tactacaaccggaaagctgcccaaatccctacttctagagtttctgccatttttgattcc
actttccatgatgctaagggttgggctaggaggtttgctacatctattaatagacactta
ccaggaatcatgaatcctcactccaagttcgttcagagctggactaagttctttgccttt
tcttgcttgttagctatttttatagatcccctcttcttcttcctcatattagtcaagcag
aacaataattgcattgagattgattggccgatggctcacacatttgtagctgttagaagt
gtaacagatgttttgttctctgtaaacattctgcttcagttccgattagcctatgtagct
cctgagtctacggttgttggtgctggccagttggtagaccatccaagaaaaattgctagt
cattacttccgaggaaagtttttactagatttgttcatagtgatgccacttccacagata
ttgatattatggataataccagcacacttagccatatctggggcaaactatgcaaagaac
cttttacgtgctgcagttcttttccaatacattcccaagttgtataggctactaccactt
cttgctggacaaacacccactggcttcatctttgagtcggcttgggctaatttttttatt
aatcttctcaccttcatgcttgctggtcatgtcgttggctcttgttggtatctttttggt
ctgcagagagttaatcaatgccttcgagatgcttgcggtaattctgatcgtccatgcaga
gagcttatagattgtcatggtgctttatcagctgcgtggaaagataacgcgggtgccagt
gcttgttttcaagaggatggttttccttatggaatatatttgaaggcagttaatctcacc
aatcataatagcctcttcacaagatacagttactctcttttttggggtttccagcaaatc
agcacgcttgctggaaacctaattccaagttactttcttggggaggtcttcttcaccatg
ggcattatcggattggggcttttgcttttcgctcttcttattggtaatatgcagaacttc
cttcaatctctcggtcgaaggaatttggaaatgactttgagacggcgtgatgtggagcaa
tggatgaggcatagacggttgccaggagatattagaaagagggtgcgagaggctgagcgg
ttcaactgggctgctaccagaggagttaatgaagaattgttgtttaagaatatgcctgat
gaccttcaaagagagataagaagacacctcttcatatttctcaagaaggtgaggatattt
tcggtgatggatgaatcaatcttagatgctatacgtgagaggctgaaacaaaggacttac
ataaggagtagcatggtcttgcaccgcggaggtctagttgagaaaatggtattcatagtg
agaggtgagatagagagcgttggagaagatggttatgttctaccattgtcagaaggagat
gtttgtggtgaagaacttctcacttggtgcctcgaacgctcttctgtgaaccccgatggg
acaaggatacggatgccctcaaagggactgcttagcaacagaaacgttaggtgtgtgaca
aacgtggaggcgttttcgctgagtgtagcagatcttgaagatgtaacgagcttgttctct
agattcctaaggagcaatcgtgtgcaaggagccataaggtatgagtctccttattggagg
ctacgagcagctatgcagattcaagtggcttggagataccgaaggagacggcttcagaga
ttgtacactgatcagtctagttacagcctctag
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