Brassica napus (rape): 106422939
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Entry
106422939 CDS
T04128
Name
(RefSeq) exosome complex component RRP4 homolog
KO
K03679
exosome complex component RRP4
Organism
bna
Brassica napus (rape)
Pathway
bna03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106422939
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106422939
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
106422939
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
106422939
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRP4_S1
KH_6
ECR1_N
RRP40_S1
S1
EXOSC1
Motif
Other DBs
NCBI-GeneID:
106422939
NCBI-ProteinID:
XP_013719181
UniProt:
A0A817AU66
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All DBs
Position
A10:1008533..1010406
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AA seq
323 aa
AA seq
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MMMRKIQLPFTQTQKVRYERAIERLQSLSSTVNSDASVIVTDTIPVNHEDAFLKGHGTSE
VDGELLATVCGVVERVDKLVYVRTLRARYKPEVGDIVVGRVIEVAQKRWRVELNFTQDGV
LMLSSMNMPDGSQRRRTSVDELNMRNIFVEHDVVCAEVRSIQHDGSLQLHARSQKYGKLE
KGQLLKVDPYLVKRSKHHFHYIESLGIDLIIGCNGFIWVGEHVEVRDPVMMIDDQKDAEM
ISSSSSTKEQSHTPLETRQNICRIGNAIRVLSNLGFTVTVEVITETLNLSNSKNIDIHNM
LGSEFHVVVAENEAERRREKRKK
NT seq
972 nt
NT seq
+upstream
nt +downstream
nt
atgatgatgagaaagatacaattaccgtttacacagacgcagaaggtgaggtacgagaga
gccatagagcggctacaatcactctcatcgacggtaaactccgacgcttctgttatcgtc
acagacaccattcccgtcaaccacgaagacgccttcctcaagggacacgggacttccgag
gtcgacggcgagctgctcgcgacggtttgtggagttgttgagcgcgtggataagctcgtc
tatgtacgcaccttacgcgccaggtacaagcctgaggttggtgatattgtggtaggacgt
gtcattgaggttgctcaaaaacgttggagagtagagctcaactttactcaggatggtgta
ctaatgctttcttccatgaacatgcccgatggtagtcagaggcgaagaacgtctgtagat
gaactcaacatgcggaacatctttgtagaacatgatgtcgtttgtgccgaagtacgcagc
attcagcatgatgggagcttgcagttacacgcaaggagtcagaagtatggaaagcttgag
aagggacagcttctcaaggttgatccctacttggttaagagaagcaaacatcactttcat
tacatagaaagccttgggatcgatttgattatcggctgcaatggcttcatatgggtcgga
gaacacgtcgaagtcagagatcctgtgatgatgatcgatgatcaaaaggatgctgagatg
atctcttcctcctcctccaccaaagagcagagccacactccactcgagactcgtcaaaac
atatgcagaatcgggaacgccatacgcgtcttatctaacctaggcttcaccgtgactgta
gaagtgatcaccgagactctaaacctcagcaactcaaagaatatcgacatacacaacatg
cttgggtcagagtttcacgtagtggtcgcagagaatgaagctgaaagaagacgtgaaaag
aggaaaaagtga
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