Brassica napus (rape): 106423004
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Entry
106423004 CDS
T04128
Name
(RefSeq) sm-like protein LSM2
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
bna
Brassica napus (rape)
Pathway
bna03018
RNA degradation
bna03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106423004
09123 Folding, sorting and degradation
03018 RNA degradation
106423004
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106423004
03041 Spliceosome [BR:
bna03041
]
106423004
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106423004
mRNA degradation factors
5'-3' decay
Lsm complex
106423004
Spliceosome [BR:
bna03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
106423004
Complex C
U2 snRNP components
106423004
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
LSM14
DUF1256
Motif
Other DBs
NCBI-GeneID:
106423004
NCBI-ProteinID:
XP_013719246
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All DBs
Position
A10:complement(1004075..1005276)
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AA seq
93 aa
AA seq
DB search
MLFFSYFKDLVGQEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
FIRGSVVRYVQLPPDGVDVDLLHDAARREARGG
NT seq
282 nt
NT seq
+upstream
nt +downstream
nt
atgttgttcttttcgtactttaaggatttggtgggacaagaagtgacggttgagctgaag
aacgatttagcaatcagagggacacttcattcagttgatcagtacctcaacatcaagctc
gagaacactcgtgttgttgatcaggacaagtaccctcacatgttgtcggtgagaaactgt
ttcatcagaggatcagtggtgaggtacgtgcagttacctcctgatggagttgatgttgat
ttacttcacgatgcagctagaagagaggccagaggtggatga
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