Brassica napus (rape): 106424472
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Entry
106424472 CDS
T04128
Name
(RefSeq) eukaryotic initiation factor 4A-III homolog
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
bna
Brassica napus (rape)
Pathway
bna03013
Nucleocytoplasmic transport
bna03015
mRNA surveillance pathway
bna03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106424472
09122 Translation
03013 Nucleocytoplasmic transport
106424472
03015 mRNA surveillance pathway
106424472
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106424472
03041 Spliceosome [BR:
bna03041
]
106424472
03009 Ribosome biogenesis [BR:
bna03009
]
106424472
03012 Translation factors [BR:
bna03012
]
106424472
Enzymes [BR:
bna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106424472
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
106424472
mRNA cycle factors
Stress granule specific factors
106424472
Spliceosome [BR:
bna03041
]
Complex C
Other components
EJC/TREX
106424472
Ribosome biogenesis [BR:
bna03009
]
Eukaryotic type
90S particles
Helicases
106424472
Translation factors [BR:
bna03012
]
Eukaryotic type
Initiation factors
eIF-4
106424472
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
CMS1
Utp25_C
Helicase_RecD
AAA_22
Flavi_DEAD
DUF1198
Motif
Other DBs
NCBI-GeneID:
106424472
NCBI-ProteinID:
XP_022572192
LinkDB
All DBs
Position
A3:18913249..18916259
Genome browser
AA seq
408 aa
AA seq
DB search
MAEANPSRGGGRRGGGPMDNDKLVFETTEGIEPITNFNDMGIKEDVLRGVYEYGFEKPSA
IQQRAVMPILQGRDVIAQAQSGTGKTSMIALSVCQIVDTSSREVQALILSPTRELASQTE
KTIQAIGLHANIQAHACIGGKSVGEDIRKLENGVHVVSGTPGRVCDMIKRKSLRTRAIKL
LILDESDEMLSRGFKDQIYDVYRYLPPDLQVCLVSATLPHEILEMTSKFMTEPVKILVKR
DELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLSEKMRTNNFT
VSSMHGDMPQKERDEIMNQFRSGDSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIH
RIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atggcggaagcgaatcctagccgtggaggcggaaggagaggcggcgggccgatggataac
gacaagttagtcttcgagaccaccgaagggatcgagcccatcaccaatttcaacgatatg
ggtattaaggaagacgtgcttcgcggcgtctacgagtacggcttcgagaaaccatccgcg
attcagcagagagctgtcatgccgattctccaagggcgagatgttattgctcaagctcag
tccggtactggaaaaacctccatgattgctctctccgtctgccaaatcgttgacacttcg
tctagagaagttcaggccttgatattgtccccaacaagagagctagcttcacaaacagag
aagactattcaagctattggattacacgcaaacattcaggcgcatgcttgcattggtggg
aagagcgttggagaagacatcaggaagctggagaatggtgtccatgttgtctctgggaca
cctggccgtgtctgtgacatgattaagaggaaaagtctacgcaccagagctattaagctt
ctgattcttgatgagtctgatgagatgctgagcagagggttcaaggaccaaatctatgat
gtttacagatatcttccacctgatcttcaggtttgcttggtttctgcaactcttcctcac
gagattttggagatgacgtccaagtttatgacggaaccggtgaagatacttgtgaagcgt
gatgagttgactcttgaaggcattaaacaatttttcgttgctgttgagaaagaggagtgg
aaatttgatacgctctgtgatctttatgacactcttacaatcactcaagctgttatcttc
tgcaacactaaacgaaaggtggattggctaagtgagaaaatgaggactaacaacttcaca
gtctcatcaatgcacggtgacatgcctcagaaggagagagacgagatcatgaatcagttt
cggtcaggggacagtcgtgttttgatcacgacagatgtatgggcacgtgggattgatgtg
cagcaagtttctcttgtgatcaattatgatctccccaacaaccgtgagctctacatccat
cgtattggacgatctggtcgtttcggccgtaagggtgttgcgatcaactttgttaaaagc
gacgacatcaagatcctccgggacattgagcagtactacagtactcagattgacgagatg
ccaatgaatgtagctgatcttatctaa
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