Brassica napus (rape): 106425130
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Entry
106425130 CDS
T04128
Name
(RefSeq) eukaryotic initiation factor 4A-III homolog isoform X1
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
bna
Brassica napus (rape)
Pathway
bna03013
Nucleocytoplasmic transport
bna03015
mRNA surveillance pathway
bna03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106425130
09122 Translation
03013 Nucleocytoplasmic transport
106425130
03015 mRNA surveillance pathway
106425130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106425130
03041 Spliceosome [BR:
bna03041
]
106425130
03009 Ribosome biogenesis [BR:
bna03009
]
106425130
03012 Translation factors [BR:
bna03012
]
106425130
Enzymes [BR:
bna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106425130
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
106425130
mRNA cycle factors
Stress granule specific factors
106425130
Spliceosome [BR:
bna03041
]
Complex C
Other components
EJC/TREX
106425130
Ribosome biogenesis [BR:
bna03009
]
Eukaryotic type
90S particles
Helicases
106425130
Translation factors [BR:
bna03012
]
Eukaryotic type
Initiation factors
eIF-4
106425130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
Utp25_C
CMS1
AAA_22
NAT10_TcmA_helicase
Flavi_DEAD
DUF1198
Motif
Other DBs
NCBI-GeneID:
106425130
NCBI-ProteinID:
XP_013721298
UniProt:
A0A078GHI2
LinkDB
All DBs
Position
C5:complement(43494499..43496984)
Genome browser
AA seq
408 aa
AA seq
DB search
MAEANPGRGGGRRSGGPMDDDKLVFETTEGIEPITNFNDMGIKEDVLRGVYEYGFEKPSA
IQQRAVMPILQGRDVIAQAQSGTGKTSMIALSVCQIVDTSSREVQALILSPTRELASQTE
KTIQAIGLHANIQAHACIGGKSVGEDIRKLENGVHVVSGTPGRVCDMIKRRSLRTRAIKL
LILDESDEMLSRGFKDQIYDVYRYLPPDLQVCLVSATLPHEILEMTSKFMTEPVKILVKR
DELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLSEKMRTNNFT
VSSMHGDMPQKERDEIMNQFRSGDSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIH
RIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atggcggaagcgaatcctggccgtggaggtggaagaagaagcggtggaccaatggacgac
gacaaattggtcttcgagacgacggaagggatcgagcccatcacgaatttcaacgacatg
gggatcaaggaggacgttctccgcggcgtctacgagtacggtttcgagaagccctctgcg
attcagcagagagcggtcatgccgattctccaaggtcgagatgtgatcgctcaggctcag
tccggtaccggaaagacctcaatgattgctctctccgtctgccaaatcgttgacacttcg
tctagagaagttcaggcgttgatattgtcgccaactagagagttggcttcacagacggag
aagactattcaagctattgggttacacgctaatatccaggcgcatgcgtgtattggtggg
aagagcgttggagaggatatcaggaagctggagaatggtgtccatgttgtgtctgggaca
cctggtcgtgtttgtgatatgattaagaggaggagtctgcgtaccagagctattaagctt
ttgattcttgatgagtctgatgagatgcttagcagagggttcaaggaccaaatctatgat
gtttacagatatcttccacctgatcttcaggtttgcttggtttctgcaactcttcctcac
gagattttggagatgacatccaagtttatgactgaaccagtgaagatccttgtgaagcgt
gatgagttgactcttgagggcattaaacaatttttcgttgctgttgagaaagaggagtgg
aaatttgatacactctgtgatctttatgacacacttactatcactcaagctgttatcttc
tgcaacacaaaaagaaaggtggattggctaagtgagaaaatgaggactaacaacttcaca
gtctcatcgatgcatggtgacatgcctcagaaggagagagacgagatcatgaaccagttt
cggtcaggcgacagtcgtgttttgatcacgacagatgtatgggcacgtgggattgatgtg
cagcaagtttctcttgtcataaattatgatctccccaacaaccgtgagctctacatccac
cgtattggacgatctggtcgattcgggcgtaagggtgttgcgatcaactttgttaaaagc
gacgacataaagatcctccgagacattgagcagtactacagtacccagattgacgagatg
ccaatgaatgtagctgatcttatctaa
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