Brassica napus (rape): 106425770
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Entry
106425770 CDS
T04128
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7
KO
K14409
protein SMG7
Organism
bna
Brassica napus (rape)
Pathway
bna03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106425770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106425770
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
106425770
mRNA cycle factors
Common to processing body (P body) and stress granule
106425770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
106425770
NCBI-ProteinID:
XP_013721938
LinkDB
All DBs
Position
A2:3009275..3014201
Genome browser
AA seq
1036 aa
AA seq
DB search
MDKKTASSPWERAQSIFDKTIELEAKRRKAAQSRTPTSDPNLWQQIRENYEAIVLEDHAF
SEQHTIEFTLWQLHYKRIEEYRSNINAVLASGSSGAAQNAKGPSISERVARVKLRFRTFL
SEATGFYHEMILKIRSNYGLPLGYFSDDQESQNLADKDGKKLAQVKKGLVSCHRCLIYLG
DLARYKGLYGEGGDSKNREYAAASGYYLQAASLLPASGNPHHQLAIIASYSADEFAATYR
YFRSLAVESPFPTARDNLIVAFEKNRQSYAQLLAASKDSSTKPNGKGRGKGEDKSSEDAN
VASVPEKDKVTSANEMLKAFCIRFVRLNGILFTRTSLETFFDVLASTSISLRELITSSLM
EVLVFGKDTSDSALFIVRLVTILIFSAHNLKKGTDPKKETEGQSYAQIVQRVEPARNSLT
ASFELLGHVIEQCAQLRDPSSSYFLPGVLVFVEWLACCPDIASGSDPDERLAAARNSFWN
QCVAFFNRLLSLGPMYIDDVEDETCFSNMSMYDERETENRLALWEDYELRGFLPLLPAQT
ILDFSRKHSFGTEGPKEKKARIKRILAAGKALTSVIKVDQNCVYFDSKKKKFLVGVKPSG
DLLDSHSNPPEADNALQENQAMMNHNTPVTQRDQQIYLDEEDDEEEEIVFKPLVTEKRNG
ASDQTYVPNGGLRNPDQVPNGGFRKPDQVATMREDLKSLSVSDAAFQGNMLQHSRGNAAV
QVPASVGSNLLGHLLPSTQSQGMQLQQPQTQAVHPQQAQSLASSRLQPHQSQVSQLQPLQ
SRTVHFQQTQGQVSHAAPAQPQSTSLSGSNWFPNEAARSLSGFAQMGNGLVMRNEMQGNQ
GFSYYPAHSLPIHQSFNVNGMGGMPYSQSRTPEAVLPPNINAVSSAGVIADGMGMQSSLA
RKNPIGRASRHLGPPPGFNPVPSKVVKEPAPGPDMSGNNPQVDDYSWLDGYQGQSSRGTG
FNGSLNYASPGKPEHMGTGNGLNGPSTFPFPGKQAPASQTQAEFPYAQHPQRDNDQSAQL
PDQNQGQPSWSSRRFV
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atggataaaaagactgcttcctcgccatgggagcgagcccaatccatattcgataagact
attgagttggaagccaagcgtaggaaggctgcacagtctcggaccccgacgtctgacccc
aatttgtggcagcaaattcgcgagaattacgaagctatcgttctcgaagatcatgctttc
tctgagcagcacaccattgagtttacactgtggcagttgcattacaaacggattgaagag
tacagatcaaacatcaatgctgtcttggcttctggtagctccggtgcggctcagaatgca
aagggtccttctatatccgaacgagtcgcgagggtcaagctgaggttcagaacttttctt
tcggaagcaactgggttttaccatgagatgatattgaaaattagatcgaactatggtctt
cccctgggttacttttccgatgatcaagagagtcaaaatttggctgataaggatgggaag
aagctggctcaagttaagaaaggcttggtgtcttgtcaccgttgcttaatataccttggt
gatcttgctcggtacaaaggattgtatggagagggaggagattccaagaaccgagagtat
gctgctgcttcgggttactatttgcaagcagcttctctgttgccagccagtggaaaccca
catcatcagcttgctataattgcttcttattcggcggatgagtttgcagcaacttatcgt
tacttccggagcttggctgtggagagtccttttcccactgcccgtgacaacttgattgtt
gcttttgaaaagaatcgtcagagttatgcccagttgcttgcggcttccaaagactcatct
acaaagccgaatggtaaaggaagaggtaaaggcgaagacaaatcatcggaagatgcgaac
gtggcttctgttcctgagaaggataaagtaactagtgcaaatgagatgcttaaagcattc
tgcattagatttgtacgtctcaacgggattcttttcacccgaacaagcctggagacattc
tttgatgttcttgcttccactagcatcagtctacgagagctgattacttcaagcttaatg
gaagtgctggtttttggcaaagacaccagtgacagcgcactcttcattgttagactcgtg
acgattcttatattcagcgcccataaccttaagaaagggacagaccctaagaaagagaca
gagggtcagtcatatgcgcaaattgtacagcgtgtggagcctgctagaaactccttaaca
gcaagtttcgagttacttggacacgtaatagagcagtgtgcgcaactgcgtgatccttcg
tcaagctatttcttgcctggtgtcttagtttttgttgaatggttggcctgttgtcctgat
attgcatcgggaagtgatccggatgaaagactggctgctgcgagaaacagcttttggaac
cagtgtgttgccttcttcaatcgactcttgtcgcttgggcctatgtatattgatgatgtc
gaagatgagacttgcttctcaaacatgagcatgtatgatgaaagagaaactgaaaaccga
cttgctctgtgggaggactatgaattaagaggattcttgccattgcttccagctcagact
attctcgatttctcaagaaaacattcctttggaactgaagggcccaaggaaaagaaagct
cgtattaagaggatcctagcagcagggaaagcattgaccagtgtgatcaaggttgatcag
aattgtgtttattttgactcaaagaagaagaagtttctcgttggtgttaaaccgtccggt
gacttactggattctcattcaaacccacctgaagctgataatgctttacaagaaaaccaa
gcaatgatgaaccataatacgccagtgacgcaacgagatcagcagatttacttggatgag
gaagatgatgaagaagaagaaattgttttcaaacctctagttactgagaagaggaatggg
gcttctgaccaaacctatgttcctaatggaggcttgaggaatcctgatcaagttcctaac
ggaggcttcaggaaacctgatcaagttgctacgatgagagaagacttaaaatctctgagt
gtttcagatgcagcttttcaaggaaacatgcttcagcactcaagaggcaatgcagctgtt
caagtgcctgcgtctgttggttctaaccttctgggacatcttctgccgtcaacccagtct
cagggtatgcagttgcaacaacctcagacacaagcagtgcatcctcagcaagctcaatcg
ctggcttcttcacgacttcaaccacatcaatcacaggtctcacaacttcaaccactgcaa
tcacggactgtgcactttcaacaaactcagggacaggtttcacatgctgcaccggcccag
ccacaatcaacttcccttagtggtagcaactggttcccaaatgaagctgctaggagccta
tctggtttcgctcagatgggtaatggtcttgtgatgaggaacgagatgcaaggaaaccag
ggattttcctattaccctgcacactcattgccgatccaccagtctttcaatgtcaacggt
atgggtggtatgccatattctcagtcacgaacacccgaagctgtgttgccacccaatatc
aatgctgtttcatctgctggagttattgctgatggcatgggtatgcagtcttcattagcg
agaaaaaatccaatcggtagagcctccaggcatctcggccctccacctgggtttaaccct
gtcccctctaaggtggtaaaggagcctgcacctggtccggatatgtctggcaacaatcca
caggttgatgattacagctggttggatggataccaaggccagtcttctcgaggcaccggt
ttcaacggttctttgaattacgcatctcctgggaaaccagagcacatgggtaccggcaat
ggattgaacgggccttccacctttccgttccctggaaaacaagctcctgcatcacagaca
caagcagaatttccttatgctcagcatcctcagagagacaacgatcaatcagctcaactc
cccgatcaaaatcaaggacagcccagttggtcgagtcgtcgctttgtgtga
DBGET
integrated database retrieval system
