Brassica napus (rape): 106426256
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Entry
106426256 CDS
T04128
Name
(RefSeq) polygalacturonase
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Module
bna_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106426256
Enzymes [BR:
bna01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
106426256
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Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
106426256
NCBI-ProteinID:
XP_013722423
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Position
A7:complement(22343659..22347765)
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AA seq
397 aa
AA seq
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MASSLSLVHIFTILVTITMSRFAQFDARTSLNVLSFGAKPDGVVDSTKAFSDAWDSACRV
EDSAMIYVPKGRYLIGRELRFEGESCRSREITLRVDGTLIGPQDYRLLGKEQNWFSFVGV
HNVTVLGGSFDAKGSTLWSCKANGQNCPEGATTLRFMDSYNVKIIGVLSLNSQLFHIAIN
RCNNVKIEDIRIIAPDDSPNTDGIHIQKSTDIEVRNASIKTGDDCISIGPGTKNLMVDGI
TCGPGHGISIGSLAKDLEEEGVVNVTVKKAVFVRTDNGLRIKSWPRHSKGFVERVRFLGA
LMVNVSYPILIDQNYCPGDSYCPTEESGIKINDVIYSGIMGTSATKVAIKMDCSERFPCT
QIRMQAINLTYRGGAATTSCINASGKQLGLVIPNGCL
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atggcatcgtctctaagcttggttcacatctttaccatccttgtaacaattaccatgtcc
cgttttgctcagtttgacgcaagaacaagtcttaacgttctgagtttcggggcgaaacca
gacggagttgtagattccacaaaagccttttcggatgcatgggactcagcgtgtcgagtg
gaagactcggccatgatttacgtgccaaaaggaaggtatttgattggtcgggagcttcgt
tttgaaggagaaagttgcagaagccgtgagataaccctaagggtcgatggaactttgatt
ggtcctcaagattacaggttgcttgggaaagaacaaaattggttcagttttgttggtgtt
cacaatgttactgttcttggaggttcttttgatgctaaaggatccacactatggagttgc
aaggccaatggtcaaaactgccctgaaggtgcaacgacactgagattcatggactcttac
aacgtcaagatcataggagtattgtcgttgaacagtcaattgttccacatagcaatcaac
cgatgcaacaatgtaaagattgaggatatccgcatcatagcaccagatgatagccccaac
actgatggaattcacattcagaaatcgactgacatcgaggtcagaaatgcttctatcaaa
actggagacgactgtatatctatcggacctggtacaaagaacttgatggtagatggaatc
acctgtggtcctggtcatggaatcagcattggtagcttagcgaaggacctagaggaggaa
ggcgtggtaaacgtgacagtgaagaaggcagtgttcgtacgaacggacaatgggctaagg
ataaagtcgtggccacgtcatagcaaaggattcgtggagagggttcggttcttaggggct
cttatggtcaacgtctcctatcctatcctcatcgaccagaactattgccctggcgattct
tattgccctactgaggagtcgggaatcaaaataaacgatgtaatatacagtggaatcatg
ggaacatcggccacaaaagttgctataaagatggattgcagcgagagattcccatgcact
cagatacgaatgcaggcaattaatctaacttatcgcggtggagcagcaacgacttcttgc
atcaatgcttccggtaagcaacttggtttggttatacccaacggatgtctctga
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