Brassica napus (rape): 106426271
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Entry
106426271 CDS
T04128
Name
(RefSeq) transcription elongation factor SPT6 homolog
KO
K11292
transcription elongation factor SPT6
Organism
bna
Brassica napus (rape)
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bna03021
]
106426271
03036 Chromosome and associated proteins [BR:
bna03036
]
106426271
Transcription machinery [BR:
bna03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
106426271
Chromosome and associated proteins [BR:
bna03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
106426271
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
SPT6_acidic
HTH_44
Tex_central_region
Spt6_S1
HHH_9
HHH_3
Tex_N
Tex_YqgF
Motif
Other DBs
NCBI-GeneID:
106426271
NCBI-ProteinID:
XP_013722441
LinkDB
All DBs
Position
C6:complement(38653638..38660521)
Genome browser
AA seq
1591 aa
AA seq
DB search
MSRNVVSDEEDDHELEDEDGEPVHADPVGNADNDDDDEEEEEGEDEYENDGFIVGDEEEE
EEEDDEEEEKKNSDEERQKKKKKRRKMDEDLDEDDYLLLQDNDVKFQKRKFKRLKKAQRE
REGGQGGSSDDEFDRSGGAGRSAEDKIKDNLFDDVDDLPDDVGDEEELAVEEDVVGSEDE
MADFIVDEDGNGQPRRGDPRKKRYRQGSDMSAIHDANEIFGDVGELLSLRKKGLASSERM
ERRLEDEFEPTILSEKYMTGKDDEIRQVDIPERMQISEDSTGSPPVDELSIEEESSWIYA
QLTSMLKDPDGLYVLGGQGFSVSKDDIAKFLELHHVQKLEIPFIAMYRKEQCRSLLDSSD
NSDLNIEKKPETKCQKVLWMIQDLDKKWLLLRKRKTALHGYYAKRFEEESRRVYDENRLN
LNQYLFESVMKSLKVAETEREVDDVDSKFNLHFPAGEVGVDEGQYKRPKRKSQYSVCSKA
GLWEVANKFGYSAEQLGLALSLEKLVDELEDAKETPEEMAMNFMCAMFENSQAVLKGARH
MAAVEISCEPSVKKYVRGIYLENAVVSTSPTAEGNGVIDSYHQFAGVKWLREKPLSKFEG
AQWLLIQKAEEEKLLQVTFKLPENYMNRLVSDCYEHYLSVGVSKYAQLWNEQRKLILEDA
LHAFILPSMEKEARNLLTSRAKSRLLSEYGQALWDKVSAGPYQKKEMDISSDEEAAPRVM
ACCWGPGKPPNTFVMLDSSGEVLDVLYAGSLTLRSQNVNDQQRKKNDQDRVLKFMMDHQP
HVVALGAVNLACTRLKDDIYEVIFQMVEEKPRDVGQMDDLTIVYVDESLPRLYENSRISG
EQLPQQSGIVKRAVALGRYLQNPLVMAATLCGPGREILSWKLHPLEGFLQVDEKYGMVEQ
VMVDITNQVGIDINLAASHEWLFSPLQFISGLGPRKAASLQRSLVRAGSIFVRKDLIMHG
LGKKVFVNAAGFLRIRRSGLAASSSQFIDLLDDTRIHPESYGLAQELAKDIYDQDVRGDS
NDDEDAIEMAIEHVRDRPGSLRKVVLEEYLASKNRENKKETYSNIMRELSCGFQDWRIPF
KDPSPDEEFYMNSGETEDTIAEGRIVQATVRRLQSGRAICVLDSGLTGMLSKEDFADDGR
DIVELSDRLKEGEILTCKIKSIQKLRYQVFLICKESEMRNNRHQRNQNLDPYYHEDRNSL
QIEKEKARKEKELVKKHFKSRMIVHPRFQNITADQATEYLSDKEFGESIVRPSSRGLNYL
TLTLKIYDGVYAHKEIVEGGKESKDITSLQRIGKTLTIGEDTFEDLDEVMDRYVDPLVSH
LKTMLNYRKFRKGTKSEVDELLRIEKSENPARIVYCFGISHEHPGTFILSYIRSTNPHHE
YVGLYPKGFKFRKRMFESIDKLVAYFQRHIDDPLQETVPSIRSVAAMVPMRSPADRGSSG
GGSWGGNSDRSSAPRPGRGGEYRNGGGRGDGHPSGAPRPYGGRARGRGRRDNNIEREDGN
GDWGNNNTGSGDGGWGSSGGGGGGGCWGSESGGKKNDGAGGWGSESGGGGGGWGNESGGK
KSSEDGGWGKEASGKKSGEDGGWGNSGGGGW
NT seq
4776 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaggaacgttgtttccgacgaagaagacgatcacgagctcgaggatgaggacgga
gagccagttcatgcagatcctgtcggtaatgctgacaacgatgatgatgatgaggaggag
gaagagggtgaggatgaatatgagaatgatgggttcatagttggtgatgaggaagaagaa
gaggaggaagatgacgaagaagaagagaagaaaaatagcgatgaagagaggcagaaaaag
aagaagaaacgaaggaaaatggacgaagatcttgatgaagatgactatctgcttctccaa
gataacgatgtcaaattccaaaagaggaagtttaagaggttgaagaaagctcaaagggaa
agggaaggtggccaggggggatcatctgatgatgagtttgataggagtggtggagctgga
agaagtgccgaggacaagatcaaagacaatctctttgatgatgttgatgatttgcctgat
gacgtaggcgatgaggaggaattggcggtggaagaagatgtagttgggagcgaggatgaa
atggctgatttcatcgtagatgaagatgggaatggtcagcctaggaggggagaccctagg
aaaaagagatataggcaaggatcagatatgagtgctatacatgatgctaacgaaatattt
ggtgatgtcggagagttattgtcacttcgtaagaagggtctggcatctagtgaaaggatg
gaaagaaggctcgaagatgagtttgagccaactattctttctgaaaagtacatgactggg
aaagatgatgaaatccgccaagttgatattcccgagaggatgcagatatctgaagacagc
actggaagccctcctgttgatgaacttagcattgaggaagagagcagttggatatatgca
cagcttacttcgatgctaaaagatcctgatggactttatgttttaggaggacaaggtttc
tcggtcagcaaggatgatattgcaaaatttttggagcttcatcatgtgcagaaactagag
ataccatttatagccatgtaccgaaaggagcaatgccggagcttgttggactcttctgat
aatagtgacctcaatatagagaagaaacctgagaccaagtgccaaaaggtcctctggatg
attcaggacttggataagaagtggctccttcttcgaaaaaggaaaacggcgttgcatggt
tactatgcaaagcgtttcgaagaagagtctaggagggtctatgatgaaaataggctcaat
ctaaatcagtatctttttgaatctgtcatgaagtcgcttaaagtggcagaaacagagaga
gaagttgatgatgtagattccaagttcaacctgcattttcctgccggtgaagttggtgtt
gatgaagggcagtacaagaggccaaagcgaaaatctcaatatagcgtctgcagcaaagca
gggctctgggaggttgcaaacaagtttgggtatagcgcggagcagttgggacttgcattg
tccctagaaaaactggttgatgaacttgaggatgcaaaggaaacaccagaggagatggca
atgaactttatgtgcgctatgtttgaaaattctcaagctgttcttaagggtgcacggcat
atggctgccgttgagataagttgcgagccatcagtcaaaaagtatgtccgtggcatttat
ctggagaatgcagtagtctcaacgagtccaacagcagaggggaatggagtaatagactct
taccatcagtttgctggggttaaatggttacgtgaaaagccattgagcaagtttgaaggt
gcgcagtggcttctcattcagaaggcagaagaggagaaacttcttcaagtgaccttcaag
ctgcctgagaattacatgaataggctggttagcgactgctatgaacactatctgagcgtc
ggtgttagtaagtatgctcaactctggaatgagcaaagaaaattgatattggaggatgca
cttcatgctttcattttgccatcaatggagaaagaagcaagaaacttgctaaccagcaga
gcgaagagtaggttgctttcagagtatggacaggctttgtgggataaggtgtctgcaggg
ccatatcagaagaaagaaatggacattagctcagacgaggaagctgcaccgagggtcatg
gcatgttgttggggccctggaaagccgccaaatacatttgtgatgctggattcatcggga
gaagtgcttgatgtgctttatgctggatccctcacactgcgatcccaaaatgtcaacgac
caacaacgtaaaaagaatgaccaggatcgtgttttaaagtttatgatggaccaccaaccg
catgttgtggctctaggagctgtcaatttggcttgtactcgtctgaaggatgatatttat
gaagtcattttccagatggtggaagaaaaacctagagatgttgggcagatggacgattta
accattgtttatgtagacgaatcacttcctaggctatacgaaaactctcgaatctcaggc
gaacagctacctcaacagtctgggatcgtgaaacgtgcagttgctcttggacgctatctc
cagaatcctctagtaatggcagcaacgttatgtggtccaggccgggaaatattgtcttgg
aagcttcacccgttggagggttttcttcaggttgacgagaagtatgggatggttgaacag
gttatggttgacataacaaaccaggttgggatcgacattaatttggcagctagccatgag
tggcttttctctcctctacagttcatttctggacttggacctaggaaagctgcatccttg
cagaggtcgcttgtaagagctggttcaatatttgtccgcaaggacctgataatgcacggg
cttggtaaaaaagtttttgtaaacgcagccggtttcttgcgcatcaggaggagtgggctg
gctgctagcagcagccaatttatcgatctactggatgataccagaatacatccggaatcg
tacggtcttgcacaagaattggcgaaagatatttatgatcaggatgttagaggtgactcc
aacgatgatgaggatgcgatagagatggcaatagagcatgtgagagatcgaccaggctct
ctgagaaaagttgtcctcgaggagtatcttgcaagcaagaaccgggagaataagaaggaa
acttacagtaacatcatgagagagctaagctgtgggttccaggattggcggattcctttt
aaagatccaagtccagatgaagagttttatatgaactcaggcgaaactgaagacaccata
gctgagggcagaattgtccaggccactgttcggagactgcagagtggaagagccatatgt
gtattggattctggactaactgggatgctttcaaaggaggatttcgcagatgatgggaga
gatattgtggagctgtcagaccgattgaaagaaggcgagatccttacatgcaagatcaaa
tcgattcagaagctgaggtatcaagtgttccttatatgcaaggagagtgagatgagaaac
aacaggcaccagcggaaccagaatctggatccgtattaccacgaggatagaaacagtctc
cagatagaaaaggagaaagctcggaaagaaaaggagcttgtgaagaaacatttcaagtct
cggatgattgtccatccacgtttccagaacatcactgctgatcaagccaccgagtattta
tctgacaaagaatttggagagagcattgttcgtccaagctctcgaggactcaattacttg
acattgacgctcaaaatttacgatggagtctacgctcacaaggagatagttgaaggtgga
aaagaaagcaaggacatcacgagtcttcagcgtattgggaagacgctaacaattggagaa
gacaccttcgaggatttagatgaggtcatggatcggtatgttgaccctctggtctctcac
ctcaagacgatgcttaactacaggaagttccgtaaggggacaaaatcagaagttgatgag
cttctcaggatcgagaagagtgagaatccagcaaggatagtttactgtttcgggatttca
cacgagcatcctggcacctttatactgtcctacataaggagcaccaatccgcatcacgag
tacgtcggtctataccccaagggattcaagttcaggaaaaggatgtttgagagcatcgac
aagcttgtggcctacttccagaggcatattgatgacccgttgcaggaaacagttccatcg
atcaggtctgttgctgcaatggtgcccatgagaagcccagcagaccgtggctcttctgga
ggaggtagctggggtggtaactcagatcgctcttctgcaccaagaccagggagaggcggt
gagtacagaaacggtggtggacgtggtgatgggcatccaagtggagcgccaaggccttac
ggtggtcgtgctaggggcagaggaaggagggataataacattgagagagaagatggaaat
ggagattggggaaataacaataccggaagtggggatggaggttggggaagtagtggtggt
ggtggtggtggtggttgttggggaagcgagtctggcggtaaaaagaatgacggtgcaggc
ggatggggtagtgaatctggaggtggtggtggtggttggggaaatgagtctggtggcaaa
aagagcagcgaggatggtggttggggaaaggaggctagtggaaaaaagagcggtgaagac
ggcggttggggaaatagcggcggtggcggatggtga
DBGET
integrated database retrieval system
